Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| trna pseudouridine32 synthase / 23s rrna pseudouridine746 synthase | SAMN04489864_103376 | Not Available | + | 1616196 - 1616963 | 28671.6 |
| atp-dependent rna helicase dead | SAMN04489864_103377 | Not Available | + | 1617081 - 1618988 | 70088.8 |
| glycerol-3-phosphate dehydrogenase (nad(p)+) | SAMN04489864_103378 | Not Available | - | 1619057 - 1620055 | 36654.5 |
| hlyd family secretion protein | SAMN04489864_103379 | Not Available | - | 1620170 - 1621531 | 48237.7 |
| outer membrane protein | SAMN04489864_103380 | Not Available | - | 1621557 - 1622918 | 50408.0 |
| peptidoglycan/xylan/chitin deacetylase, pgda/cda1 family | SAMN04489864_103381 | Not Available | + | 1623005 - 1623688 | 26411.9 |
| aconitase | SAMN04489864_103382 | Not Available | + | 1623989 - 1626271 | 81848.1 |
| putative signal transducing protein | SAMN04489864_103383 | Not Available | - | 1626387 - 1626611 | 8110.62 |
| beta-glucosidase | SAMN04489864_103384 | Not Available | - | 1626655 - 1627992 | 51020.1 |
| muts domain v | SAMN04489864_103385 | Not Available | - | 1628049 - 1629866 | 68998.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.