Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| rare lipoprotein a | SAMN04489864_103366 | Not Available | - | 1606848 - 1607264 | 15761.2 |
| hypothetical protein | SAMN04489864_103367 | Not Available | + | 1607466 - 1608779 | 49050.9 |
| peptide-methionine (r)-s-oxide reductase | SAMN04489864_103368 | Not Available | - | 1608795 - 1609283 | 18149.9 |
| succinyl-coa synthetase alpha subunit | SAMN04489864_103369 | Not Available | - | 1609588 - 1610460 | 29741.4 |
| aerobic c4-dicarboxylate transport protein | SAMN04489864_103370 | Not Available | - | 1610556 - 1611830 | 46051.1 |
| hypothetical protein | SAMN04489864_103371 | Not Available | + | 1611946 - 1612395 | 17448.0 |
| atp-binding cassette, subfamily b | SAMN04489864_103372 | Not Available | - | 1612392 - 1614182 | 67437.6 |
| trna pseudouridine38-40 synthase | SAMN04489864_103373 | Not Available | - | 1614205 - 1614957 | 28140.9 |
| protein of unknown function | SAMN04489864_103374 | Not Available | + | 1615093 - 1615551 | 16923.6 |
| activator of hsp90 atpase homolog 1-like protein | SAMN04489864_103375 | Not Available | + | 1615708 - 1616190 | 18566.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.