Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| septum formation initiator | SAMN04489864_103356 | Not Available | + | 1595589 - 1595891 | 11875.5 |
| hypothetical protein | SAMN04489864_103357 | Not Available | + | 1595932 - 1596426 | 19267.5 |
| uncharacterized membrane protein yeih | SAMN04489864_103358 | Not Available | - | 1596432 - 1597043 | 22154.1 |
| hypothetical protein | SAMN04489864_103359 | Not Available | - | 1597043 - 1599127 | 78410.1 |
| 3-oxoacyl-[acyl-carrier-protein] reductase | SAMN04489864_103360 | Not Available | - | 1599222 - 1599965 | 26165.6 |
| agmatine deiminase | SAMN04489864_103361 | Not Available | - | 1600023 - 1601075 | 39431.6 |
| glyoxylase, beta-lactamase superfamily ii | SAMN04489864_103362 | Not Available | - | 1601072 - 1601782 | 26435.9 |
| n-carbamoylputrescine amidase | SAMN04489864_103363 | Not Available | - | 1601772 - 1602650 | 33327.5 |
| ribonucleoside-diphosphate reductase alpha chain | SAMN04489864_103364 | Not Available | - | 1603005 - 1605389 | 89326.6 |
| ribonucleoside-diphosphate reductase beta chain | SAMN04489864_103365 | Not Available | - | 1605511 - 1606488 | 37437.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.