Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| two-component system, ompr family, alkaline phosphatase synthesis response regulator phop | SAMN04489864_103336 | Not Available | - | 1574658 - 1575371 | 27607.7 |
| his kinase a (phospho-acceptor) domain-containing protein | SAMN04489864_103337 | Not Available | - | 1575373 - 1576185 | 30290.8 |
| glutamate-1-semialdehyde 2,1-aminomutase | SAMN04489864_103338 | Not Available | - | 1576236 - 1577606 | 49669.6 |
| porphobilinogen synthase | SAMN04489864_103339 | Not Available | - | 1577706 - 1578671 | 35773.1 |
| hydroxymethylbilane synthase | SAMN04489864_103340 | Not Available | - | 1578704 - 1580275 | 58400.2 |
| glutamyl-trna reductase | SAMN04489864_103341 | Not Available | - | 1580377 - 1581603 | 46592.8 |
| dna alkylation repair enzyme | SAMN04489864_103342 | Not Available | + | 1581778 - 1582557 | 30199.9 |
| yjbr protein | SAMN04489864_103343 | Not Available | + | 1582572 - 1582925 | 13414.4 |
| hypothetical protein | SAMN04489864_103344 | Not Available | + | 1582925 - 1583392 | 17142.9 |
| beta-glucosidase | SAMN04489864_103345 | Not Available | + | 1583758 - 1586073 | 86018.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.