Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| trans-aconitate methyltransferase | SAMN04489864_103316 | Not Available | + | 1556953 - 1557753 | 30438.3 |
| molybdate transport system atp-binding protein | SAMN04489864_103317 | Not Available | + | 1557763 - 1559259 | 56115.2 |
| 2-isopropylmalate synthase | SAMN04489864_103318 | Not Available | + | 1559225 - 1560388 | 42879.2 |
| 3-isopropylmalate/(r)-2-methylmalate dehydratase large subunit | SAMN04489864_103319 | Not Available | + | 1560402 - 1561808 | 50191.0 |
| 3-isopropylmalate dehydratase, small subunit | SAMN04489864_103320 | Not Available | + | 1561826 - 1562422 | 22267.3 |
| d-citramalate synthase | SAMN04489864_103321 | Not Available | + | 1562458 - 1563975 | 56106.0 |
| 3-isopropylmalate dehydrogenase | SAMN04489864_103322 | Not Available | + | 1564021 - 1565079 | 38403.0 |
| l-threonine ammonia-lyase | SAMN04489864_103323 | Not Available | + | 1565083 - 1566327 | 45943.9 |
| cupin domain-containing protein | SAMN04489864_103324 | Not Available | + | 1566340 - 1566687 | 12782.4 |
| hypothetical protein | SAMN04489864_103325 | Not Available | - | 1566693 - 1567127 | 15980.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.