Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| beta-galactosidase | SAMN04489864_103216 | Not Available | - | 1422903 - 1424951 | 78038.1 |
| alpha-l-fucosidase | SAMN04489864_103217 | Not Available | - | 1424983 - 1426461 | 55563.9 |
| glycosyl hydrolase family 88 | SAMN04489864_103218 | Not Available | - | 1426483 - 1427643 | 43855.1 |
| hexosaminidase | SAMN04489864_103219 | Not Available | - | 1427672 - 1429279 | 61456.7 |
| starch-binding associating with outer membrane | SAMN04489864_103220 | Not Available | - | 1429441 - 1431207 | 65684.6 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04489864_103221 | Not Available | - | 1431219 - 1434332 | 114969.0 |
| starch-binding associating with outer membrane | SAMN04489864_103222 | Not Available | - | 1434351 - 1436126 | 65836.0 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04489864_103223 | Not Available | - | 1436131 - 1438959 | 105128.0 |
| chrd domain-containing protein | SAMN04489864_103224 | Not Available | - | 1438984 - 1439469 | 18238.1 |
| signal transduction histidine kinase | SAMN04489864_103225 | Not Available | + | 1439653 - 1443717 | 154931.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.