Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| fumarylacetoacetate hydrolase | SAMN04489864_103186 | Not Available | - | 1390396 - 1391394 | 36767.1 |
| homogentisate 1,2-dioxygenase | SAMN04489864_103187 | Not Available | + | 1391695 - 1392861 | 44591.9 |
| 4-hydroxyphenylpyruvate dioxygenase | SAMN04489864_103188 | Not Available | + | 1392904 - 1394034 | 42622.7 |
| membrane protein | SAMN04489864_103189 | Not Available | + | 1394351 - 1395277 | 34974.1 |
| hypothetical protein | SAMN04489864_103190 | Not Available | - | 1395274 - 1395552 | 10477.8 |
| outer membrane protein beta-barrel domain-containing protein | SAMN04489864_103191 | Not Available | - | 1395686 - 1396276 | 21011.2 |
| signal transduction histidine kinase | SAMN04489864_103192 | Not Available | + | 1396390 - 1398159 | 67347.1 |
| signal transduction histidine kinase | SAMN04489864_103193 | Not Available | + | 1398251 - 1400026 | 67998.9 |
| hypothetical protein | SAMN04489864_103194 | Not Available | - | 1400019 - 1400327 | 11654.8 |
| tetratricopeptide repeat-containing protein | SAMN04489864_103195 | Not Available | + | 1400453 - 1401598 | 43673.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.