Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| s1/p1 nuclease | SAMN04489864_103166 | Not Available | + | 1370703 - 1371659 | 36598.2 |
| membrane-associated protein | SAMN04489864_103167 | Not Available | - | 1371656 - 1372333 | 25348.4 |
| dna polymerase-3 subunit beta | SAMN04489864_103168 | Not Available | - | 1372477 - 1373601 | 41332.4 |
| gliding-associated putative abc transporter substrate-binding component gldg | SAMN04489864_103169 | Not Available | - | 1373635 - 1375344 | 64181.0 |
| abc-2 type transport system permease protein | SAMN04489864_103170 | Not Available | - | 1375338 - 1376066 | 27365.1 |
| outer membrane protein beta-barrel domain-containing protein | SAMN04489864_103171 | Not Available | - | 1376114 - 1376659 | 19763.6 |
| hypothetical protein | SAMN04489864_103172 | Not Available | - | 1376677 - 1377267 | 21907.2 |
| protein involved in gliding motility glda | SAMN04489864_103173 | Not Available | - | 1377218 - 1377928 | 26248.3 |
| glycyl-trna synthetase | SAMN04489864_103174 | Not Available | + | 1378027 - 1379505 | 57022.0 |
| alpha-l-fucosidase | SAMN04489864_103175 | Not Available | + | 1379572 - 1381401 | 68762.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.