Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| putative endopeptidase | SAMN04489864_103156 | Not Available | + | 1358224 - 1360257 | 76115.8 |
| predicted dna-binding protein, mmcq/yjbr family | SAMN04489864_103157 | Not Available | - | 1360280 - 1360618 | 12999.7 |
| trna u34 5-methylaminomethyl-2-thiouridine-forming methyltransferase mnmc | SAMN04489864_103158 | Not Available | + | 1360702 - 1361373 | 24792.8 |
| thiol-disulfide isomerase or thioredoxin | SAMN04489864_103159 | Not Available | - | 1361429 - 1363339 | 73851.7 |
| susd family protein | SAMN04489864_103160 | Not Available | - | 1363332 - 1364708 | 51173.6 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04489864_103161 | Not Available | - | 1364742 - 1367990 | 119722.0 |
| protein of unknown function | SAMN04489864_103162 | Not Available | - | 1368058 - 1369119 | 40290.1 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04489864_103163 | Not Available | - | 1369152 - 1369685 | 21011.3 |
| hypothetical protein | SAMN04489864_103164 | Not Available | + | 1369785 - 1369886 | 4056.18 |
| xtp/ditp diphosphohydrolase | SAMN04489864_103165 | Not Available | + | 1369876 - 1370685 | 30927.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.