Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| cytochrome c-type biogenesis protein ccmf | SAMN04489864_103126 | Not Available | - | 1322965 - 1325439 | 92951.5 |
| cytochrome c-type biogenesis protein ccme | SAMN04489864_103127 | Not Available | - | 1325439 - 1325855 | 15628.8 |
| peptide-methionine (s)-s-oxide reductase | SAMN04489864_103128 | Not Available | - | 1325976 - 1326614 | 23549.0 |
| glutamate dehydrogenase (nad(p)+) | SAMN04489864_103129 | Not Available | - | 1326741 - 1328162 | 51666.9 |
| hypothetical protein | SAMN04489864_103130 | Not Available | - | 1328307 - 1328525 | 8148.54 |
| heme exporter protein c | SAMN04489864_103131 | Not Available | - | 1328528 - 1329184 | 25223.4 |
| heme exporter protein b | SAMN04489864_103132 | Not Available | - | 1329192 - 1329857 | 24643.4 |
| methylated-dna-[protein]-cysteine s-methyltransferase | SAMN04489864_103133 | Not Available | + | 1330205 - 1330687 | 17724.4 |
| hypothetical protein | SAMN04489864_103134 | Not Available | - | 1330702 - 1331100 | 15369.7 |
| gliding motility-associated protein gldc | SAMN04489864_103135 | Not Available | - | 1331152 - 1331487 | 13117.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.