Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| l,d-transpeptidase catalytic domain | SAMN04489864_10396 | Not Available | - | 1297888 - 1299510 | 63014.4 |
| atp phosphoribosyltransferase | SAMN04489864_10397 | Not Available | + | 1299739 - 1300590 | 30647.3 |
| histidinol dehydrogenase | SAMN04489864_10398 | Not Available | + | 1300660 - 1301949 | 46612.0 |
| histidinol phosphate aminotransferase apoenzyme | SAMN04489864_10399 | Not Available | + | 1301967 - 1303007 | 38489.4 |
| imidazoleglycerol-phosphate dehydratase | SAMN04489864_103100 | Not Available | + | 1303007 - 1304140 | 42394.6 |
| glutamine amidotransferase | SAMN04489864_103101 | Not Available | + | 1304165 - 1304758 | 21748.5 |
| 1-(5-phosphoribosyl)-5-[(5- phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase | SAMN04489864_103102 | Not Available | + | 1304760 - 1305509 | 28063.0 |
| cyclase | SAMN04489864_103103 | Not Available | + | 1305638 - 1306393 | 26890.6 |
| phosphoribosyl-atp pyrophosphatase /phosphoribosyl-amp cyclohydrolase | SAMN04489864_103104 | Not Available | + | 1306523 - 1307125 | 22797.3 |
| wd domain-containing protein, g-beta repeat-containing protein | SAMN04489864_103105 | Not Available | + | 1307143 - 1308045 | 34196.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.