Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| tryptophan synthase, alpha chain | SAMN04489864_10356 | Not Available | - | 1261108 - 1261875 | 28343.9 |
| tryptophan synthase beta chain | SAMN04489864_10357 | Not Available | - | 1261947 - 1263128 | 42846.4 |
| phosphoribosylanthranilate isomerase | SAMN04489864_10358 | Not Available | - | 1263165 - 1263767 | 22543.1 |
| anthranilate phosphoribosyltransferase | SAMN04489864_10359 | Not Available | - | 1263817 - 1264806 | 36060.1 |
| tetratricopeptide repeat-containing protein | SAMN04489864_10360 | Not Available | - | 1264992 - 1266968 | 74547.4 |
| short-chain dehydrogenase | SAMN04489864_10361 | Not Available | - | 1266970 - 1267785 | 29515.3 |
| alkaline phosphatase | SAMN04489864_10362 | Not Available | - | 1267785 - 1268546 | 29075.1 |
| dna replication and repair protein recr | SAMN04489864_10363 | Not Available | - | 1268548 - 1269165 | 22776.8 |
| na+/proline symporter | SAMN04489864_10364 | Not Available | + | 1269235 - 1270743 | 55533.9 |
| hypothetical protein | SAMN04489864_10365 | Not Available | + | 1270803 - 1271510 | 26707.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.