Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN04489864_10336 | Not Available | + | 1239478 - 1240083 | 23330.9 |
| rna polymerase primary sigma factor | SAMN04489864_10337 | Not Available | + | 1240339 - 1241199 | 32691.1 |
| glyceraldehyde 3-phosphate dehydrogenase | SAMN04489864_10338 | Not Available | + | 1241343 - 1242791 | 53664.1 |
| phenazine biosynthesis protein phzf family | SAMN04489864_10339 | Not Available | + | 1242795 - 1243589 | 29209.2 |
| voltage-dependent potassium channel beta subunit, animal | SAMN04489864_10340 | Not Available | - | 1243688 - 1244671 | 36708.5 |
| peptidase family m28 | SAMN04489864_10341 | Not Available | + | 1244743 - 1245756 | 37910.4 |
| pdz domain-containing protein | SAMN04489864_10342 | Not Available | - | 1245774 - 1247381 | 59146.9 |
| fmn phosphatase yigb, had superfamily | SAMN04489864_10343 | Not Available | - | 1247440 - 1248048 | 23565.4 |
| hypothetical protein | SAMN04489864_10344 | Not Available | - | 1248062 - 1248544 | 17745.5 |
| lipoprotein-releasing system atp-binding protein | SAMN04489864_10345 | Not Available | - | 1248549 - 1249199 | 23457.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.