Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| susd family protein | SAMN04489864_1036 | Not Available | - | 1198102 - 1199475 | 51922.3 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04489864_1037 | Not Available | - | 1199489 - 1202929 | 128312.0 |
| protein of unknown function | SAMN04489864_1038 | Not Available | - | 1203210 - 1204382 | 43384.5 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04489864_1039 | Not Available | - | 1204515 - 1205150 | 24809.0 |
| type iv secretory system conjugative dna transfer | SAMN04489864_10310 | Not Available | - | 1205216 - 1207306 | 78425.2 |
| relaxase/mobilisation nuclease domain-containing protein | SAMN04489864_10311 | Not Available | - | 1207317 - 1208582 | 47807.3 |
| hypothetical protein | SAMN04489864_10312 | Not Available | - | 1208567 - 1208974 | 15678.3 |
| hypothetical protein | SAMN04489864_10313 | Not Available | + | 1209448 - 1209693 | 9352.61 |
| Trna-his | Not Available | Not Available | + | 1211226 - 1211299 | Not Available |
| ribonuclease hi | SAMN04489864_10315 | Not Available | + | 1211420 - 1211941 | 19811.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.