Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glycosyl hydrolase family 88 | SAMN04489864_102468 | Not Available | + | 1170583 - 1171821 | 47763.5 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN04489864_102469 | Not Available | + | 1172021 - 1172602 | 22934.6 |
| fecr protein | SAMN04489864_102470 | Not Available | + | 1172682 - 1173854 | 43443.9 |
| tonb-linked outer membrane protein, susc/raga family | SAMN04489864_102471 | Not Available | + | 1174047 - 1177526 | 125921.0 |
| starch-binding associating with outer membrane | SAMN04489864_102472 | Not Available | + | 1177546 - 1179015 | 53471.6 |
| bnr repeat-containing family member | SAMN04489864_102473 | Not Available | + | 1179102 - 1180559 | 55517.3 |
| glucose/arabinose dehydrogenase, beta-propeller fold | SAMN04489864_102474 | Not Available | + | 1180654 - 1182126 | 54745.8 |
| mn2+ and fe2+ transporters of the nramp family | SAMN04489864_102475 | Not Available | + | 1182126 - 1183337 | 42431.5 |
| nucleoside-diphosphate-sugar epimerase | SAMN04489864_102476 | Not Available | + | 1183362 - 1184378 | 36936.6 |
| dihydrodipicolinate synthase/n-acetylneuraminate lyase | SAMN04489864_102477 | Not Available | + | 1184378 - 1185439 | 39461.1 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.