Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| d-amino-acid dehydrogenase | SAMN04489864_102438 | Not Available | + | 1121026 - 1122273 | 45266.5 |
| hypothetical protein | SAMN04489864_102439 | Not Available | + | 1122400 - 1125156 | 102301.0 |
| alpha-glucosidase | SAMN04489864_102440 | Not Available | - | 1125501 - 1127483 | 74790.9 |
| arac-type dna-binding protein | SAMN04489864_102441 | Not Available | + | 1127761 - 1128666 | 34072.8 |
| protein of unknown function | SAMN04489864_102442 | Not Available | + | 1128704 - 1130482 | 68297.9 |
| amino acid/polyamine/organocation transporter, apc superfamily | SAMN04489864_102443 | Not Available | + | 1130595 - 1131956 | 49237.5 |
| dipeptidyl peptidase iv (dpp iv) n-terminal region | SAMN04489864_102444 | Not Available | + | 1132196 - 1134493 | 86612.6 |
| f5/8 type c domain-containing protein | SAMN04489864_102445 | Not Available | + | 1134638 - 1138186 | 131357.0 |
| adp-ribose pyrophosphatase yjhb, nudix family | SAMN04489864_102446 | Not Available | - | 1138546 - 1139253 | 27571.5 |
| protein of unknown function | SAMN04489864_102447 | Not Available | - | 1139363 - 1140343 | 36063.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.