Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| transcriptional regulator, laci family | SAMN04489864_102428 | Not Available | - | 1108175 - 1109236 | 40432.1 |
| ectoine hydroxylase-related dioxygenase, phytanoyl-coa dioxygenase (phyh) family | SAMN04489864_102429 | Not Available | - | 1109308 - 1110105 | 29780.4 |
| mfs transporter, acs family, hexuronate transporter | SAMN04489864_102430 | Not Available | - | 1110110 - 1111306 | 43375.7 |
| protein of unknown function, duf608 | SAMN04489864_102431 | Not Available | - | 1111317 - 1113530 | 83064.8 |
| sialate o-acetylesterase | SAMN04489864_102432 | Not Available | - | 1113534 - 1115510 | 73311.5 |
| hypothetical protein | SAMN04489864_102433 | Not Available | + | 1115514 - 1115762 | 9638.58 |
| hypothetical protein | SAMN04489864_102434 | Not Available | + | 1115889 - 1117214 | 50851.4 |
| 4-hydroxy-tetrahydrodipicolinate synthase | SAMN04489864_102435 | Not Available | + | 1117357 - 1118274 | 33819.0 |
| nadp-dependent aldehyde dehydrogenase | SAMN04489864_102436 | Not Available | + | 1118433 - 1120013 | 56019.4 |
| proline racemase | SAMN04489864_102437 | Not Available | + | 1120013 - 1121014 | 36350.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.