Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter insulae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | aerobic |
| Optimal temperature | 29 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter insulae
Accession NumberFOPP00000000.1
Gene Summary
Adenine Count
1354377 bp
Thymine Count
1356728 bp
Guanine Count
858481 bp
Cytosine Count
818419 bp
Genome Length
4388005 bp
Protein-coding Genes
3774 genes
Non-Coding Genes
42 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| starch-binding associating with outer membrane | SAMN04489864_102418 | Not Available | + | 1094291 - 1095898 | 59387.9 |
| carbohydrate-binding family 9 | SAMN04489864_102419 | Not Available | + | 1095986 - 1096624 | 24374.2 |
| n-acetylglucosamine-6-phosphate deacetylase | SAMN04489864_102420 | Not Available | + | 1096644 - 1097843 | 43246.3 |
| glucosamine-6-phosphate deaminase | SAMN04489864_102421 | Not Available | + | 1097851 - 1098612 | 28363.0 |
| ectoine hydroxylase-related dioxygenase, phytanoyl-coa dioxygenase (phyh) family | SAMN04489864_102422 | Not Available | + | 1098673 - 1099488 | 30553.2 |
| sugar phosphate isomerase/epimerase | SAMN04489864_102423 | Not Available | + | 1099492 - 1100325 | 32525.8 |
| hypothetical protein | SAMN04489864_102424 | Not Available | + | 1100333 - 1103194 | 108773.0 |
| polygalacturonase | SAMN04489864_102425 | Not Available | + | 1103202 - 1104674 | 54605.8 |
| chondroitin ac lyase | SAMN04489864_102426 | Not Available | + | 1104839 - 1106893 | 77299.1 |
| glycosyl hydrolase family 88 | SAMN04489864_102427 | Not Available | + | 1106903 - 1108081 | 44789.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.