Xenorhabdus nematophila ATCC 19061

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Morganellaceae

Genus

Xenorhabdus

Description

Xenorhabdus nematophila (strain ATCC 19061 / DSM 3370 / LMG 1036 / NCIB 9965 / AN6) is an insect pathogenic, facultatively anaerobic, non-spore forming Gram-negative bacterium isolated from the hemolymph of Galleria mellonella infected with Steinernema carpocapsae. X. nematophila possesses numerous peritrichous flagella mutualistically associated with the nematode S. carpocapsae and is only found inside infected hosts. The symbiotic association is essential for the survival of both nematode and its symbiotic bacteria. Free-living, juvenile S. carpocapsae enter insect larvae through the digestive tract. They penetrate the larvae body cavity and release X. nematophila into the hemolymph (blood). The bacteria multiply rapidly, killing the larvae, and providing suitable nutrient conditions for the growth and reproduction of S. carpocapsae. The nematode matures and reproduces. The new juveniles reassociate with X. nematophila and are released into the soil. This bacterium has great potential as a biological control agent for noxious insects in cryptic environments. It is therefore anticipated that with the tools and research knowledge presently available a bio-pesticide can be developed. (Adapted from PMID: 15909327). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyMorganellaceae
GenusXenorhabdus
SpeciesXenorhabdus nematophila
StrainATCC 19061

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Xenorhabdus nematophila ATCC 19061
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNonsporulating
Energy sourceNot Available
PathogenicityNo

Genome Summary

Xenorhabdus nematophila ATCC 19061


Gene Summary

Adenine Count

42778 bp

Thymine Count

41136 bp

Guanine Count

37027 bp

Cytosine Count

34386 bp

Genome Length

155327 bp

Protein-coding Genes

187 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

2

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
aaa family atpaseXNC1_RS19780Not Available+37713 - 3868135253.7
hypothetical proteinXNC1_RS19785Not Available+38692 - 3959733578.6
phage recombination protein betXNC1_RS19790Not Available+39757 - 4074937596.2
yqaj viral recombinase family proteinXNC1_RS24610Not Available+40812 - 410609699.53
yqaj viral recombinase family proteinXNC1_RS19795Not Available+41077 - 4184729555.3
duf3150 domain-containing proteinXNC1_RS19800Not Available+42046 - 4332347565.5
vwa domain-containing proteinXNC1_RS19805Not Available+43409 - 4520564468.1
hypothetical proteinXNC1_RS24470Not Available+45267 - 4560212809.6
hypothetical proteinXNC1_RS24475Not Available+45870 - 4617211269.5
hypothetical proteinXNC1_RS24480Not Available+46138 - 4641610603.8

Displaying genes 41 – 50 of 187 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1740 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm00012442-succinylbenzoateC11H8O5Chemical structure of 2-succinylbenzoate27415-09-04
Average220.181Da
Monoisotopic220.038270517Da
BASm0001462ubiquinone-0C9H10O4Chemical structure of ubiquinone-0605-94-7
Average182.1733Da
Monoisotopic182.057908808Da

Displaying 1–10 of 1740 metabolites