Pedobacter terrae

rod

Kingdom

Pseudomonadati

Phylum

Bacteroidota

Class

Sphingobacteriia

Order

Sphingobacteriales

Family

Sphingobacteriaceae

Genus

Pedobacter

Description

Pedobacter terrae is a Gram-negative, non-spore-forming rod-shaped bacterium that optimally thrives at a temperature of 25.0°C. This microbe belongs to the genus Pedobacter, which is known for its diverse metabolic capabilities and adaptability to various environmental conditions. The rod shape of P. terrae is characteristic of many members within its taxonomic group, which often play significant roles in soil microbiomes and organic matter degradation. As a non-spore-forming organism, Pedobacter terrae relies on vegetative growth for reproduction and survival in its environment. Its Gram-negative cell wall structure is indicative of a thin peptidoglycan layer surrounded by an outer membrane, which may provide it with resistance to certain antibiotics and environmental stresses. The optimal growth temperature of 25.0°C suggests that P. terrae is well-adapted to temperate environments, potentially making it an important player in soil ecosystems where moderate temperatures prevail. Although specific ecological roles remain to be fully elucidated, the traits of P. terrae imply that it may contribute to nutrient cycling and organic matter decomposition, processes crucial for maintaining soil health and fertility. The metabolic versatility often observed in Pedobacter species highlights their potential significance in biogeochemical cycles, particularly in the breakdown of complex organic compounds in soil habitats.

Taxonomy

KingdomPseudomonadati
PhylumBacteroidota
ClassSphingobacteriia
OrderSphingobacteriales
FamilySphingobacteriaceae
GenusPedobacter
SpeciesPedobacter terrae
StrainNo strain

Profile

Physiology
Gram staining propertiesGram-negative
Shaperod
Mobilitynon-motile
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsNot Available
Optimal temperature25
Temperature rangemesophilic
HabitatNot Available
Biotic relationshipNot Available
Host(s)Not Available
Cell arrangementNot Available
Sporulationnon-spore-forming
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Pedobacter terrae

Accession NumberFNCH00000000.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

0 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
murein l,d-transpeptidase ycbb/ykudSAMN05421827_101123Not Available+125229 - 12679458656.4
l,d-transpeptidase catalytic domainSAMN05421827_101124Not Available-126791 - 12752226568.4
glycosyltransferase, gt2 familySAMN05421827_101125Not Available+127844 - 12866531057.4
glycosyltransferase family 28 c-terminal domain-containing proteinSAMN05421827_101126Not Available-128662 - 12961235176.9
glycosyltransferase involved in cell wall bisynthesisSAMN05421827_101127Not Available-129710 - 13078039495.4
protein of unknown functionSAMN05421827_101128Not Available+130962 - 13127011339.4
two-component system, ompr family, alkaline phosphatase synthesis response regulator phopSAMN05421827_101129Not Available+131355 - 13169913092.8
peptidase family s41SAMN05421827_101130Not Available-131811 - 13327756687.9
helix-turn-helix domain-containing proteinSAMN05421827_101131Not Available-133464 - 13432433668.6
hypothetical proteinSAMN05421827_101132Not Available-134449 - 13564846992.1

Displaying genes 121 – 130 of 5014 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites