Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter terrae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter terrae
Accession NumberFNCH00000000.1
Gene Summary
Adenine Count
1757318 bp
Thymine Count
1765928 bp
Guanine Count
1120783 bp
Cytosine Count
1109922 bp
Genome Length
5755101 bp
Protein-coding Genes
0 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| hypothetical protein | SAMN05421827_11983 | Not Available | - | 4558447 - 4558950 | 19287.1 |
| protein of unknown function | SAMN05421827_11984 | Not Available | + | 4559548 - 4559892 | 12802.2 |
| serine protease, s1-c subfamily, contains c-terminal pdz domain | SAMN05421827_11985 | Not Available | - | 4559951 - 4561501 | 53893.1 |
| diaminopimelate epimerase | SAMN05421827_11986 | Not Available | + | 4561903 - 4562685 | 29028.3 |
| membrane fusion protein, multidrug efflux system | SAMN05421827_11987 | Not Available | + | 4563467 - 4564636 | 41721.9 |
| hydrophobic/amphiphilic exporter-1, hae1 family | SAMN05421827_11988 | Not Available | + | 4564686 - 4567868 | 114884.0 |
| efflux transporter, outer membrane factor (omf) lipoprotein, nodt family | SAMN05421827_11989 | Not Available | + | 4567879 - 4569279 | 51266.0 |
| helicase conserved c-terminal domain-containing protein | SAMN05421827_11990 | Not Available | + | 4569740 - 4572631 | 111872.0 |
| protein of unknown function | SAMN05421827_11991 | Not Available | + | 4572943 - 4573260 | 11475.6 |
| protein of unknown function | SAMN05421827_11992 | Not Available | + | 4573327 - 4574109 | 28797.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.