Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter terrae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter terrae
Accession NumberFNCH00000000.1
Gene Summary
Adenine Count
1757318 bp
Thymine Count
1765928 bp
Guanine Count
1120783 bp
Cytosine Count
1109922 bp
Genome Length
5755101 bp
Protein-coding Genes
0 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| putative beta-barrel porin-2, ompl-like. bbp2 | SAMN05421827_11813 | Not Available | + | 4406252 - 4407322 | 39070.1 |
| hypothetical protein | SAMN05421827_11814 | Not Available | + | 4407414 - 4407662 | 9752.71 |
| two-component system, ompr family, sensor histidine kinase kdpd | SAMN05421827_11815 | Not Available | + | 4407668 - 4408798 | 42783.3 |
| hypothetical protein | SAMN05421827_11816 | Not Available | + | 4408852 - 4409229 | 13797.2 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN05421827_11817 | Not Available | + | 4409429 - 4410223 | 28539.4 |
| hypothetical protein | SAMN05421827_11818 | Not Available | - | 4410480 - 4410644 | 6314.67 |
| dinb superfamily protein | SAMN05421827_11819 | Not Available | + | 4410683 - 4411195 | 19051.9 |
| uncharacterized conserved protein ydei, yjbr/cyay-like superfamily, duf1801 family | SAMN05421827_11820 | Not Available | + | 4411316 - 4411939 | 23805.1 |
| predicted dna-binding transcriptional regulator yafy, contains an hth and wyl domains | SAMN05421827_11821 | Not Available | + | 4411978 - 4412946 | 38163.4 |
| uncharacterized damage-inducible protein dinb (forms a four-helix bundle) | SAMN05421827_11822 | Not Available | - | 4413243 - 4413701 | 18121.8 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.