Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter terrae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter terrae
Accession NumberFNCH00000000.1
Gene Summary
Adenine Count
1757318 bp
Thymine Count
1765928 bp
Guanine Count
1120783 bp
Cytosine Count
1109922 bp
Genome Length
5755101 bp
Protein-coding Genes
0 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| sugar or nucleoside kinase, ribokinase family | SAMN05421827_1172 | Not Available | + | 4280398 - 4281318 | 33795.7 |
| predicted heme/steroid binding protein | SAMN05421827_1173 | Not Available | - | 4281455 - 4281697 | 9311.01 |
| lycopene cyclase domain-containing protein | SAMN05421827_1174 | Not Available | - | 4281987 - 4282676 | 27068.9 |
| hypothetical protein | SAMN05421827_1175 | Not Available | - | 4282678 - 4283208 | 19973.7 |
| phytoene desaturase | SAMN05421827_1176 | Not Available | + | 4283848 - 4285329 | 56261.6 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05421827_1177 | Not Available | - | 4285869 - 4286399 | 20428.5 |
| udp-n-acetylmuramate dehydrogenase | SAMN05421827_1178 | Not Available | - | 4286527 - 4287543 | 36908.9 |
| hypothetical protein | SAMN05421827_1179 | Not Available | - | 4287585 - 4288034 | 16883.3 |
| beta-carotene 3-hydroxylase | SAMN05421827_11710 | Not Available | - | 4288053 - 4288379 | 12992.9 |
| dna-binding transcriptional regulator, acrr family | SAMN05421827_11711 | Not Available | + | 4288652 - 4289263 | 23520.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.