Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter terrae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter terrae
Accession NumberFNCH00000000.1
Gene Summary
Adenine Count
1757318 bp
Thymine Count
1765928 bp
Guanine Count
1120783 bp
Cytosine Count
1109922 bp
Genome Length
5755101 bp
Protein-coding Genes
0 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| putative abc transport system permease protein | SAMN05421827_11515 | Not Available | + | 4055369 - 4056598 | 44026.4 |
| tyrosine-protein phosphatase ywqe | SAMN05421827_11516 | Not Available | - | 4056736 - 4057479 | 28348.3 |
| hypothetical protein | SAMN05421827_11517 | Not Available | - | 4057494 - 4058051 | 21469.3 |
| udp-glucose 4-epimerase | SAMN05421827_11518 | Not Available | - | 4058052 - 4059074 | 37229.1 |
| dtdp-glucose 4,6-dehydratase | SAMN05421827_11519 | Not Available | - | 4059076 - 4060065 | 37367.9 |
| udpglucose 6-dehydrogenase | SAMN05421827_11520 | Not Available | - | 4060067 - 4061377 | 48094.9 |
| 3-deoxy-d-manno-octulosonic-acid transferase | SAMN05421827_11521 | Not Available | + | 4061436 - 4062758 | 50025.0 |
| gluconokinase | SAMN05421827_11522 | Not Available | - | 4062736 - 4063221 | 17855.3 |
| ferrochelatase | SAMN05421827_11523 | Not Available | - | 4063257 - 4064267 | 38043.0 |
| beta-carotene ketolase (crtw type) | SAMN05421827_11524 | Not Available | - | 4064683 - 4065357 | 26816.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.