Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter terrae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter terrae
Accession NumberFNCH00000000.1
Gene Summary
Adenine Count
1757318 bp
Thymine Count
1765928 bp
Guanine Count
1120783 bp
Cytosine Count
1109922 bp
Genome Length
5755101 bp
Protein-coding Genes
0 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| d-serine deaminase, pyridoxal phosphate-dependent | SAMN05421827_11497 | Not Available | + | 4032459 - 4033574 | 41723.7 |
| membrane dipeptidase | SAMN05421827_11498 | Not Available | + | 4033584 - 4034654 | 40307.8 |
| beta-glucosidase | SAMN05421827_11499 | Not Available | + | 4034666 - 4037053 | 86918.9 |
| iron complex outermembrane recepter protein | SAMN05421827_114100 | Not Available | + | 4037540 - 4040011 | 91296.1 |
| uncharacterized iron-regulated membrane protein | SAMN05421827_114101 | Not Available | + | 4040011 - 4041225 | 46340.1 |
| hypothetical protein | SAMN05421827_114102 | Not Available | - | 4041425 - 4041545 | 4508.35 |
| hypothetical protein | SAMN05421827_1151 | Not Available | + | 4042407 - 4043372 | 36129.0 |
| lipid a 3-o-deacylase (pagl) | SAMN05421827_1152 | Not Available | + | 4043372 - 4044481 | 41557.5 |
| hypothetical protein | SAMN05421827_1153 | Not Available | - | 4044478 - 4044837 | 13325.2 |
| uncharacterized damage-inducible protein dinb (forms a four-helix bundle) | SAMN05421827_1154 | Not Available | - | 4044871 - 4045338 | 17412.3 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.