Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter terrae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter terrae
Accession NumberFNCH00000000.1
Gene Summary
Adenine Count
1757318 bp
Thymine Count
1765928 bp
Guanine Count
1120783 bp
Cytosine Count
1109922 bp
Genome Length
5755101 bp
Protein-coding Genes
0 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| cystathionine gamma-lyase/cystathionine beta-lyase | SAMN05421827_11466 | Not Available | + | 3997290 - 3998429 | 42048.4 |
| tigr02757 family protein | SAMN05421827_11468 | Not Available | + | 3998637 - 3999485 | 33186.8 |
| camp-binding domain of crp or a regulatory subunit of camp-dependent protein kinases | SAMN05421827_11469 | Not Available | + | 3999598 - 4000212 | 23988.0 |
| dna-binding response regulator, narl/fixj family, contains rec and hth domains | SAMN05421827_11470 | Not Available | + | 4000819 - 4001466 | 23798.0 |
| hypothetical protein | SAMN05421827_11471 | Not Available | - | 4001494 - 4001679 | 6475.27 |
| hypothetical protein | SAMN05421827_11472 | Not Available | - | 4001952 - 4002071 | 4619.08 |
| dna polymerase-4 | SAMN05421827_11473 | Not Available | + | 4002111 - 4003457 | 50667.8 |
| dna polymerase-3 subunit alpha | SAMN05421827_11474 | Not Available | + | 4003461 - 4006478 | 116018.0 |
| hypothetical protein | SAMN05421827_11475 | Not Available | + | 4006489 - 4007064 | 21817.4 |
| bacteriocin-protection, ydei or ompd-associated | SAMN05421827_11476 | Not Available | + | 4007294 - 4007803 | 19319.5 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.