Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter terrae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter terrae
Accession NumberFNCH00000000.1
Gene Summary
Adenine Count
1757318 bp
Thymine Count
1765928 bp
Guanine Count
1120783 bp
Cytosine Count
1109922 bp
Genome Length
5755101 bp
Protein-coding Genes
0 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dna-binding transcriptional regulator, marr family | SAMN05421827_10837 | Not Available | + | 2703107 - 2703718 | 22973.6 |
| phytoene/squalene synthetase | SAMN05421827_10838 | Not Available | + | 2703729 - 2704565 | 32291.0 |
| tigr03643 family protein | SAMN05421827_10839 | Not Available | + | 2704598 - 2704870 | 10557.1 |
| dna-binding transcriptional regulator, lysr family | SAMN05421827_10840 | Not Available | - | 2705024 - 2705911 | 33549.7 |
| trna (cmo5u34)-methyltransferase | SAMN05421827_10841 | Not Available | + | 2706003 - 2706725 | 27115.2 |
| hypothetical protein | SAMN05421827_10842 | Not Available | + | 2706941 - 2707630 | 26019.7 |
| c-terminal processing protease ctpa/prc, contains a pdz domain | SAMN05421827_10843 | Not Available | + | 2707867 - 2709267 | 51603.6 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05421827_10844 | Not Available | + | 2709600 - 2709935 | 12877.7 |
| ferric-dicitrate binding protein ferr, regulates iron transport through sigma-19 | SAMN05421827_10845 | Not Available | + | 2710476 - 2711423 | 35567.8 |
| outer membrane receptor proteins, mostly fe transport | SAMN05421827_10846 | Not Available | + | 2711591 - 2714836 | 121824.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.