Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter terrae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter terrae
Accession NumberFNCH00000000.1
Gene Summary
Adenine Count
1757318 bp
Thymine Count
1765928 bp
Guanine Count
1120783 bp
Cytosine Count
1109922 bp
Genome Length
5755101 bp
Protein-coding Genes
0 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| thioredoxin reductase (nadph) | SAMN05421827_10827 | Not Available | - | 2687224 - 2688459 | 45308.9 |
| alpha-l-fucosidase 2 | SAMN05421827_10828 | Not Available | - | 2688661 - 2691108 | 90954.5 |
| thiol-disulfide isomerase or thioredoxin | SAMN05421827_10829 | Not Available | - | 2691643 - 2692818 | 44127.3 |
| pkd-like family protein | SAMN05421827_10830 | Not Available | - | 2692850 - 2694298 | 54082.6 |
| protein of unknown function | SAMN05421827_10831 | Not Available | - | 2694310 - 2695044 | 27324.7 |
| susd family protein | SAMN05421827_10832 | Not Available | - | 2695058 - 2696488 | 52236.3 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05421827_10833 | Not Available | - | 2696514 - 2699735 | 117835.0 |
| fecr protein | SAMN05421827_10834 | Not Available | - | 2700042 - 2701235 | 44150.9 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05421827_10835 | Not Available | - | 2701330 - 2701929 | 23280.5 |
| nad(p)-dependent dehydrogenase, short-chain alcohol dehydrogenase family | SAMN05421827_10836 | Not Available | + | 2702330 - 2703049 | 25267.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.