Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter terrae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter terrae
Accession NumberFNCH00000000.1
Gene Summary
Adenine Count
1757318 bp
Thymine Count
1765928 bp
Guanine Count
1120783 bp
Cytosine Count
1109922 bp
Genome Length
5755101 bp
Protein-coding Genes
0 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| dna-binding transcriptional regulator, hxlr family | SAMN05421827_107132 | Not Available | + | 2532824 - 2533285 | 18113.1 |
| dna-binding response regulator, ompr family, contains rec and winged-helix (whth) domain | SAMN05421827_107133 | Not Available | - | 2533302 - 2534036 | 27777.5 |
| two-component system, ompr family, phosphate regulon sensor histidine kinase phor | SAMN05421827_107134 | Not Available | - | 2534051 - 2535484 | 54723.1 |
| alpha-l-fucosidase | SAMN05421827_107135 | Not Available | + | 2535695 - 2537098 | 52940.4 |
| rna polymerase sigma-70 factor, ecf subfamily | SAMN05421827_107136 | Not Available | - | 2537167 - 2537676 | 19767.5 |
| pas domain s-box-containing protein | SAMN05421827_107137 | Not Available | + | 2538112 - 2540058 | 72260.5 |
| helix-turn-helix domain-containing protein | SAMN05421827_107138 | Not Available | - | 2540111 - 2540998 | 34311.2 |
| hypothetical protein | SAMN05421827_107139 | Not Available | + | 2541060 - 2541239 | 6586.22 |
| l-rhamnose mutarotase | SAMN05421827_107140 | Not Available | + | 2541246 - 2541581 | 13112.0 |
| d-threo-aldose 1-dehydrogenase | SAMN05421827_107141 | Not Available | + | 2541574 - 2542593 | 37094.2 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.