Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter terrae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter terrae
Accession NumberFNCH00000000.1
Gene Summary
Adenine Count
1757318 bp
Thymine Count
1765928 bp
Guanine Count
1120783 bp
Cytosine Count
1109922 bp
Genome Length
5755101 bp
Protein-coding Genes
0 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| glycosyl hydrolases family 2, tim barrel domain | SAMN05421827_106189 | Not Available | - | 2322885 - 2324735 | 69637.1 |
| cellulase (glycosyl hydrolase family 5) | SAMN05421827_106190 | Not Available | - | 2324953 - 2326032 | 40856.4 |
| beta-xylosidase, gh43 family | SAMN05421827_106191 | Not Available | - | 2326048 - 2327085 | 38916.9 |
| glycosyl hydrolases family 43 | SAMN05421827_106192 | Not Available | - | 2327202 - 2328167 | 36138.8 |
| protein of unknown function | SAMN05421827_106193 | Not Available | - | 2328322 - 2329023 | 25580.7 |
| starch-binding associating with outer membrane | SAMN05421827_106194 | Not Available | - | 2329036 - 2330958 | 71119.7 |
| tonb-linked outer membrane protein, susc/raga family | SAMN05421827_106195 | Not Available | - | 2330960 - 2334163 | 120413.0 |
| two component regulator propeller | SAMN05421827_106196 | Not Available | + | 2335487 - 2338606 | 117879.0 |
| helix-turn-helix domain-containing protein | SAMN05421827_106197 | Not Available | + | 2338591 - 2339406 | 31008.3 |
| uncharacterized membrane protein ypha, doxx/surf4 family | SAMN05421827_106198 | Not Available | + | 2339475 - 2339921 | 16711.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.