Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter terrae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter terrae
Accession NumberFNCH00000000.1
Gene Summary
Adenine Count
1757318 bp
Thymine Count
1765928 bp
Guanine Count
1120783 bp
Cytosine Count
1109922 bp
Genome Length
5755101 bp
Protein-coding Genes
0 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| phage shock protein pspc (stress-responsive transcriptional regulator) | SAMN05421827_105176 | Not Available | - | 2045517 - 2046218 | 26214.3 |
| hypothetical protein | SAMN05421827_105177 | Not Available | - | 2046226 - 2046915 | 25083.9 |
| hypothetical protein | SAMN05421827_105178 | Not Available | - | 2046919 - 2047038 | 4857.99 |
| phospholipid/cholesterol/gamma-hch transport system permease protein | SAMN05421827_105179 | Not Available | + | 2047063 - 2047797 | 26170.8 |
| phospholipid/cholesterol/gamma-hch transport system atp-binding protein | SAMN05421827_105180 | Not Available | + | 2047797 - 2048549 | 28159.0 |
| protein of unknown function | SAMN05421827_105181 | Not Available | + | 2048573 - 2048818 | 9109.8 |
| pin domain nuclease, a component of toxin-antitoxin system (pin domain) | SAMN05421827_105182 | Not Available | + | 2048818 - 2049207 | 15091.4 |
| 23s rrna (cytosine1962-c5)-methyltransferase | SAMN05421827_105183 | Not Available | + | 2049204 - 2050085 | 33375.0 |
| hypothetical protein | SAMN05421827_105184 | Not Available | + | 2050173 - 2051222 | 39220.1 |
| peptide-methionine (s)-s-oxide reductase | SAMN05421827_105185 | Not Available | + | 2051405 - 2051947 | 20402.9 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.