Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter terrae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter terrae
Accession NumberFNCH00000000.1
Gene Summary
Adenine Count
1757318 bp
Thymine Count
1765928 bp
Guanine Count
1120783 bp
Cytosine Count
1109922 bp
Genome Length
5755101 bp
Protein-coding Genes
0 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| pyruvate dehydrogenase e1 component beta subunit | SAMN05421827_10462 | Not Available | - | 1562358 - 1563344 | 35920.6 |
| ribosomal-protein-alanine n-acetyltransferase | SAMN05421827_10463 | Not Available | - | 1563734 - 1564342 | 23867.5 |
| pd-(d/e)xk nuclease superfamily protein | SAMN05421827_10464 | Not Available | - | 1564511 - 1567366 | 109156.0 |
| predicted nuclease of restriction endonuclease-like (recb) superfamily, duf1016 family | SAMN05421827_10465 | Not Available | - | 1567375 - 1568460 | 42541.7 |
| atp-dependent exodnase (exonuclease v) beta subunit (contains helicase and exonuclease domains) | SAMN05421827_10466 | Not Available | - | 1568462 - 1571680 | 122421.0 |
| very-short-patch-repair endonuclease | SAMN05421827_10467 | Not Available | - | 1571755 - 1572270 | 19844.3 |
| trna a37 threonylcarbamoyladenosine dehydratase | SAMN05421827_10468 | Not Available | - | 1572405 - 1573196 | 28644.2 |
| tatd dnase family protein | SAMN05421827_10469 | Not Available | - | 1573244 - 1573900 | 24637.2 |
| thioredoxin-like | SAMN05421827_10470 | Not Available | + | 1574128 - 1574661 | 19599.5 |
| hypothetical protein | SAMN05421827_10471 | Not Available | - | 1574754 - 1574963 | 7930.39 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.