Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter terrae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter terrae
Accession NumberFNCH00000000.1
Gene Summary
Adenine Count
1757318 bp
Thymine Count
1765928 bp
Guanine Count
1120783 bp
Cytosine Count
1109922 bp
Genome Length
5755101 bp
Protein-coding Genes
0 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| malate dehydrogenase (oxaloacetate-decarboxylating)(nadp+) | SAMN05421827_10429 | Not Available | + | 1524282 - 1526603 | 84486.7 |
| holliday junction dna helicase ruva | SAMN05421827_10430 | Not Available | + | 1526610 - 1527194 | 21367.1 |
| cell surface protein spra | SAMN05421827_10431 | Not Available | + | 1527205 - 1534401 | 269805.0 |
| hypothetical protein | SAMN05421827_10432 | Not Available | - | 1534406 - 1534807 | 15336.2 |
| glycine cleavage system h protein | SAMN05421827_10433 | Not Available | + | 1535019 - 1535399 | 13775.0 |
| hypothetical protein | SAMN05421827_10434 | Not Available | + | 1535479 - 1535811 | 12775.6 |
| outer membrane protein beta-barrel family protein | SAMN05421827_10435 | Not Available | + | 1536070 - 1538883 | 103158.0 |
| outer membrane receptor proteins, mostly fe transport | SAMN05421827_10436 | Not Available | + | 1539114 - 1541879 | 103033.0 |
| ferrous iron transport protein a | SAMN05421827_10437 | Not Available | + | 1541978 - 1542193 | 7792.8 |
| ferrous iron transport protein b | SAMN05421827_10438 | Not Available | + | 1542205 - 1544313 | 78104.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.