Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter terrae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter terrae
Accession NumberFNCH00000000.1
Gene Summary
Adenine Count
1757318 bp
Thymine Count
1765928 bp
Guanine Count
1120783 bp
Cytosine Count
1109922 bp
Genome Length
5755101 bp
Protein-coding Genes
0 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| condensin subunit scpa | SAMN05421827_103324 | Not Available | + | 1492660 - 1493403 | 28734.7 |
| glycine hydroxymethyltransferase | SAMN05421827_103325 | Not Available | + | 1493466 - 1494737 | 45911.6 |
| glucosamine--fructose-6-phosphate aminotransferase (isomerizing) | SAMN05421827_103326 | Not Available | + | 1494888 - 1496726 | 67721.1 |
| hypothetical protein | SAMN05421827_103327 | Not Available | - | 1497267 - 1498640 | 50388.9 |
| comf family protein | SAMN05421827_103328 | Not Available | - | 1498699 - 1499397 | 26253.1 |
| 23s rrna (adenine2503-c2)-methyltransferase | SAMN05421827_1044 | Not Available | - | 1501206 - 1502261 | 39443.2 |
| 23s rrna pseudouridine2604 synthase | SAMN05421827_1045 | Not Available | - | 1502350 - 1503324 | 36216.4 |
| nadph-dependent fmn reductase | SAMN05421827_1046 | Not Available | - | 1503535 - 1503873 | 11926.5 |
| uncharacterized damage-inducible protein dinb (forms a four-helix bundle) | SAMN05421827_1047 | Not Available | - | 1503990 - 1504550 | 21095.4 |
| hth domain-containing protein | SAMN05421827_1048 | Not Available | - | 1504624 - 1505313 | 26851.7 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.