Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter terrae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter terrae
Accession NumberFNCH00000000.1
Gene Summary
Adenine Count
1757318 bp
Thymine Count
1765928 bp
Guanine Count
1120783 bp
Cytosine Count
1109922 bp
Genome Length
5755101 bp
Protein-coding Genes
0 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| udp-n-acetyl-d-galactosamine dehydrogenase | SAMN05421827_103304 | Not Available | + | 1466879 - 1468162 | 47578.3 |
| tyrosine-protein phosphatase ywqe | SAMN05421827_103305 | Not Available | + | 1468654 - 1469397 | 28203.9 |
| polysaccharide export outer membrane protein | SAMN05421827_103306 | Not Available | + | 1469519 - 1470361 | 30410.8 |
| capsular exopolysaccharide family | SAMN05421827_103307 | Not Available | + | 1470379 - 1472739 | 87528.1 |
| gdpmannose 4,6-dehydratase | SAMN05421827_103308 | Not Available | + | 1472744 - 1473871 | 42438.5 |
| gdp-l-fucose synthase | SAMN05421827_103309 | Not Available | + | 1473871 - 1474818 | 35550.5 |
| protoporphyrinogen oxidase | SAMN05421827_103310 | Not Available | + | 1474824 - 1476050 | 47256.1 |
| membrane protein involved in the export of o-antigen and teichoic acid | SAMN05421827_103311 | Not Available | + | 1476059 - 1477492 | 54215.6 |
| glycosyl transferase family 2 | SAMN05421827_103312 | Not Available | + | 1477500 - 1478543 | 39409.7 |
| acetyltransferase (isoleucine patch superfamily) | SAMN05421827_103313 | Not Available | + | 1478557 - 1479825 | 48165.0 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.