Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Sphingobacteriia
Order
Sphingobacteriales
Family
Sphingobacteriaceae
Genus
Pedobacter
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Sphingobacteriia |
| Order | Sphingobacteriales |
| Family | Sphingobacteriaceae |
| Genus | Pedobacter |
| Species | Pedobacter terrae |
| Strain | No strain |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Gram-negative |
| Shape | rod |
| Mobility | non-motile |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Not Available |
| Optimal temperature | 25 |
| Temperature range | mesophilic |
| Habitat | Not Available |
| Biotic relationship | Not Available |
| Host(s) | Not Available |
| Cell arrangement | Not Available |
| Sporulation | non-spore-forming |
| Energy source | Not Available |
| Pathogenicity | Not Available |
Genome Summary
Pedobacter terrae
Accession NumberFNCH00000000.1
Gene Summary
Adenine Count
1757318 bp
Thymine Count
1765928 bp
Guanine Count
1120783 bp
Cytosine Count
1109922 bp
Genome Length
5755101 bp
Protein-coding Genes
0 genes
Non-Coding Genes
0 genes
# of Chromosomes/Plasmids
1
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| beta-xylosidase | SAMN05421827_103181 | Not Available | - | 1325572 - 1327212 | 61353.1 |
| pectinesterase | SAMN05421827_103182 | Not Available | + | 1327544 - 1328500 | 35712.2 |
| pectate lyase superfamily protein | SAMN05421827_103183 | Not Available | + | 1328660 - 1330333 | 60547.2 |
| unsaturated rhamnogalacturonyl hydrolase | SAMN05421827_103184 | Not Available | + | 1330341 - 1332272 | 72080.4 |
| pectate lyase, pela/pel-15e family | SAMN05421827_103185 | Not Available | + | 1332357 - 1333478 | 41908.3 |
| tagaturonate reductase | SAMN05421827_103186 | Not Available | + | 1333557 - 1335068 | 56200.3 |
| altronate hydrolase | SAMN05421827_103187 | Not Available | + | 1335070 - 1336716 | 59688.1 |
| glucuronate isomerase | SAMN05421827_103188 | Not Available | + | 1336948 - 1338348 | 53667.4 |
| 2-dehydro-3-deoxygluconokinase | SAMN05421827_103189 | Not Available | + | 1338463 - 1339512 | 38887.5 |
| 2-dehydro-3-deoxyphosphogluconate aldolase / (4s)-4-hydroxy-2-oxoglutarate aldolase | SAMN05421827_103190 | Not Available | + | 1339509 - 1340171 | 24138.6 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.