Xanthomonas oryzae pv. oryzae PXO99A

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

The Xanthomonadaceae are a family of Gram negative bacteria belonging to the order Xanthomonadales in the gammaproteobacteria. They are typically characterized as environmental organisms and are found in soil and water, as well as plant tissues. Many Xanthomonadaceae, especially species from the genera Xanthomonas and Xylella, cause plant diseases. Only one, Stenotrophomonas maltophilia, has isolates known to be opportunistic human pathogens.Xanthomonas oryzae is a Gram-negative bacterium and is the causative agent of bacterial blight on rice. Bacterial blight is a major disease in rice producing countries where high-yielding rice cultivars are often highly susceptible to it. It is a vascular disease resulting in tannish-gray to white lesions along the leaf veins. In severely infested fields, bacterial blight can cause yield losses up to 50%. When it infects at the seedling stage, it causes a syndrome known as kresek, which can lead to nearly complete crop loss.PXO99A is a 5-azacytidine-resistant derivative of PXO99, which was isolated in the Philippines. Genotypically PXO99 is more similar to isolates from Nepal and India than to other Philippine isolates. In contrast to other fully-sequenced X.oryzae pv. oryzae strains MAFF and KACC, PXO99A is virulent toward a large number of rice varieties representing diverse genetic sources of resistance. Due to its amenability to genetic analysis, and its relatively broad cultivar specificity, PXO99A has been the focus of numerous studies of the molecular basis of bacterial blight and blight resistance (adapted from PubMed 18452608). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas oryzae
StrainPXO99A

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Xanthomonas oryzae pv. oryzae PXO99A
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Xanthomonas oryzae pv. oryzae PXO99A


Gene Summary

Adenine Count

954822 bp

Thymine Count

950334 bp

Guanine Count

1661178 bp

Cytosine Count

1672221 bp

Genome Length

5238555 bp

Protein-coding Genes

4626 genes

Non-Coding Genes

270 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Bacteriophage virulence determinantPXO_RS01345Not Available+312356 - 31295820033.8
Hypothetical bacteriophage proteinPXO_RS01350Not Available+313029 - 31366121298.4
transposasePXO_RS01355Not Available-313656 - 31393710489.4
Is1595 transposasePXO_RS01360Not Available-313944 - 31490935965.2
Minor tail proteinPXO_RS01365Not Available-314997 - 31553318713.1
Minor tail proteinPXO_RS01370Not Available-315592 - 31611918219.6
Minor tail proteinPXO_RS01375Not Available-316188 - 31673318854.3
Major tail subunitPXO_RS01380Not Available+317025 - 321092135750.0
AttlNot AvailableNot Available+2363531 - 2363549Not Available
Hypothetical proteinPXO_RS10825Not Available+2365542 - 23657276885.19

Displaying genes 1 – 10 of 4896 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1757 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da

Displaying 1–10 of 1757 metabolites