Xanthomonas oryzae pv. oryzae KACC 10331

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

Xanthomonas oryzae pv. oryzae KACC 10331 is a Gram-negative, rod-shaped bacterium that is typically found in host-associated environments. As an aerobic organism, it requires oxygen for its metabolic processes, which aligns with its habitat preferences and lifestyle. This strain is part of the Xanthomonadaceae family, which includes various species known for their interactions with plant hosts. Xanthomonas oryzae pv. oryzae is particularly notable for its role in agricultural ecosystems, where it may be involved in the breakdown of organic matter and nutrient cycling in host-associated habitats. The bacterium's aerobic nature suggests a potential specialization in environments with adequate oxygen supply, such as those found in the rhizosphere or the phyllosphere of plants. Understanding the ecological role of this strain can provide insights into its interactions within plant communities, particularly in relation to its potential impact on plant health and productivity. The presence of Xanthomonas oryzae pv. oryzae KACC 10331 in such habitats underscores the importance of microbial diversity in maintaining ecosystem balance and functionality.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas oryzae
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Xanthomonas oryzae pv. oryzae KACC 10331
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Xanthomonas oryzae pv. oryzae KACC 10331


Gene Summary

Adenine Count

897961 bp

Thymine Count

896113 bp

Guanine Count

1572666 bp

Cytosine Count

1574699 bp

Genome Length

4941439 bp

Protein-coding Genes

4656 genes

Non-Coding Genes

289 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+625388 - 625399Not Available
AttlNot AvailableNot Available+626009 - 626020Not Available
Putative integrase/recombinase proteinXOO_RS02900Not Available+626095 - 62718941376.9
hypothetical proteinXOO_RS02905Not Available+627428 - 6276678714.67
Putative replication proteinXOO_RS02910Not Available+627664 - 62851531039.2
hypothetical proteinXOO_RS02915Not Available+628512 - 62879610914.8
Is1480 transposaseXOO_RS23645Not Available+629211 - 63000930494.9
p-type dna transfer protein virb5XOO_RS02925Not Available+630003 - 63071926348.3
hypothetical proteinXOO_RS02930Not Available+630733 - 63121217739.9
eexn family lipoproteinXOO_RS02935Not Available+631209 - 6314699379.29

Displaying genes 1 – 10 of 4945 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

1682 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001003phthalateC8H4O4Chemical structure of phthalateNot available
Average164.117Da
Monoisotopic164.0120558Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da

Displaying 1–10 of 1682 metabolites