Xanthomonas oryzae pv. oryzae PXO99A

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Lysobacterales

Family

Lysobacteraceae

Genus

Xanthomonas

Description

The Xanthomonadaceae are a family of Gram negative bacteria belonging to the order Xanthomonadales in the gammaproteobacteria. They are typically characterized as environmental organisms and are found in soil and water, as well as plant tissues. Many Xanthomonadaceae, especially species from the genera Xanthomonas and Xylella, cause plant diseases. Only one, Stenotrophomonas maltophilia, has isolates known to be opportunistic human pathogens.Xanthomonas oryzae is a Gram-negative bacterium and is the causative agent of bacterial blight on rice. Bacterial blight is a major disease in rice producing countries where high-yielding rice cultivars are often highly susceptible to it. It is a vascular disease resulting in tannish-gray to white lesions along the leaf veins. In severely infested fields, bacterial blight can cause yield losses up to 50%. When it infects at the seedling stage, it causes a syndrome known as kresek, which can lead to nearly complete crop loss.PXO99A is a 5-azacytidine-resistant derivative of PXO99, which was isolated in the Philippines. Genotypically PXO99 is more similar to isolates from Nepal and India than to other Philippine isolates. In contrast to other fully-sequenced X.oryzae pv. oryzae strains MAFF and KACC, PXO99A is virulent toward a large number of rice varieties representing diverse genetic sources of resistance. Due to its amenability to genetic analysis, and its relatively broad cultivar specificity, PXO99A has been the focus of numerous studies of the molecular basis of bacterial blight and blight resistance (adapted from PubMed 18452608). (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderLysobacterales
FamilyLysobacteraceae
GenusXanthomonas
SpeciesXanthomonas oryzae
StrainPXO99A

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Xanthomonas oryzae pv. oryzae PXO99A
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceNot Available
PathogenicityNo

Genome Summary

Xanthomonas oryzae pv. oryzae PXO99A

Accession NumberNC_010717.2

Gene Summary

Adenine Count

954822 bp

Thymine Count

950334 bp

Guanine Count

1661178 bp

Cytosine Count

1672221 bp

Genome Length

5238555 bp

Protein-coding Genes

4626 genes

Non-Coding Genes

270 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
Hypothetical proteinPXO_RS10830Not Available+2365727 - 23659307401.05
Phage replication proteinPXO_RS10835Not Available+2366225 - 236713933900.4
Single-stranded dna binding proteinPXO_RS10840Not Available+2367244 - 236754310982.0
hypothetical proteinPXO_RS10845Not Available+2367907 - 23681467723.48
Minor coat proteinPXO_RS10850Not Available+2368508 - 236973743345.5
duf2523 family proteinPXO_RS10855Not Available+2369739 - 237005911244.2
Hypothetical proteinPXO_RS10860Not Available+2370056 - 237124044596.0
Trbp-relatedPXO_RS26030Not Available+2371295 - 23714656614.19
duf3653 domain-containing proteinPXO_RS26045Not Available-2372574 - 23728349878.98
hypothetical proteinPXO_RS10865Not Available-2373314 - 23734967131.33

Displaying genes 11 – 20 of 4896 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

74 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm00007164-methylsulfanyl-2-oxobutanoateC5H7O3SChemical structure of 4-methylsulfanyl-2-oxobutanoateNot available
Average147.17Da
Monoisotopic147.012138839Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da
BASm0001845nicotinateC6H4NO2Chemical structure of nicotinateNot available
Average122.1015Da
Monoisotopic122.0242034Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0001921(S)-3-methyl-2-oxopentanoateC6H9O3Chemical structure of (S)-3-methyl-2-oxopentanoate1460-34-0
Average129.1339Da
Monoisotopic129.0551692Da
BASm00021577-cyano-7-deazaguanineC7H5N5OChemical structure of 7-cyano-7-deazaguanineNot available
Average175.1475Da
Monoisotopic175.0494098Da

Displaying 1–10 of 74 metabolites