Rhizobium etli CFN 42 str. CFN42

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Rhizobium

Description

Rhizobium etli CFN 42 str. CFN42 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is classified as an aerobic organism. This microbe is predominantly found in host-associated environments, indicating a symbiotic relationship with its host, which is commonly legumes. As a member of the Rhizobium genus, R. etli plays a crucial role in nitrogen fixation, a process that converts atmospheric nitrogen into a form that plants can utilize. This characteristic is particularly significant in agricultural contexts, where R. etli enhances soil fertility and supports plant growth by improving nutrient availability. The aerobic nature of this bacterium suggests it requires oxygen for its metabolic processes, which aligns with its habitat that typically provides sufficient oxygen levels. In addition to its agricultural importance, R. etli CFN 42 str. CFN42 may also offer insights into microbial interactions within host-associated ecosystems. Understanding its mechanisms of symbiosis and nitrogen fixation can contribute to sustainable agricultural practices and help in the development of biofertilizers. The unique traits of this strain underscore its potential utility in enhancing crop yields while reducing the reliance on chemical fertilizers, thereby promoting more environmentally friendly farming practices.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusRhizobium
SpeciesRhizobium etli
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Rhizobium etli CFN 42 str. CFN42
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipSymbiotic
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Rhizobium etli CFN 42 str. CFN42


Gene Summary

Adenine Count

849942 bp

Thymine Count

846958 bp

Guanine Count

1326560 bp

Cytosine Count

1358148 bp

Genome Length

4381608 bp

Protein-coding Genes

4201 genes

Non-Coding Genes

74 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
type ii toxin-antitoxin system rele/pare family toxinRHE_RS22850Not Available-84 - 40712562.1
type ii toxin-antitoxin system phd/yefm family antitoxinRHE_RS22855Not Available-407 - 68810516.8
llm class flavin-dependent oxidoreductaseRHE_RS22860Not Available+905 - 189735834.6
llm class flavin-dependent oxidoreductaseRHE_RS22865Not Available+1922 - 327149167.1
m20 aminoacylase family proteinRHE_RS22870Not Available+3290 - 448942690.5
gnat family n-acetyltransferaseRHE_RS22875Not Available+4486 - 504921112.9
amino acid abc transporter permease/atp-binding proteinRHE_RS34885Not Available+5080 - 685565158.8
abc transporter substrate-binding proteinRHE_RS22890Not Available+6946 - 789033553.7
abc transporter substrate-binding proteinRHE_RS22895Not Available+7962 - 890033491.7
llm class flavin-dependent oxidoreductaseRHE_RS22900Not Available+8918 - 995238288.8

Displaying genes 1 – 10 of 5176 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

87 records
Metabolite IDMetabolite nameStructureCAS number
BASm0000217alpha-ribazoleC14H18N2O4Chemical structure of alpha-ribazoleNot available
Average278.3037Da
Monoisotopic278.126657074Da
BASm0000237(R)-4'-phosphopantothenateC9H18NO8PChemical structure of (R)-4'-phosphopantothenateNot available
Average299.2149Da
Monoisotopic299.0770031Da
BASm00002512-dehydropantoateC6H9O4Chemical structure of 2-dehydropantoateNot available
Average145.1333Da
Monoisotopic145.050083776Da
BASm0000377(S)-malateC4H4O5Chemical structure of (S)-malateNot available
Average132.0716Da
Monoisotopic132.005873238Da
BASm0000387(6R)-5,10-methylene-5,6,7,8-tetrahydrofolateC20H21N7O6Chemical structure of (6R)-5,10-methylene-5,6,7,8-tetrahydrofolateNot available
Average455.432Da
Monoisotopic455.1564286Da
BASm0000401(S)-2-succinylamino-6-oxoheptanedioateC11H12NO8Chemical structure of (S)-2-succinylamino-6-oxoheptanedioateNot available
Average286.218Da
Monoisotopic286.0579371Da
BASm00012373-hydroxy-2-methyl-3-phytyl-2,3-dihydro-1,4-naphthoquinoneC31H48O3Chemical structure of 3-hydroxy-2-methyl-3-phytyl-2,3-dihydro-1,4-naphthoquinoneNot available
Average468.722Da
Monoisotopic468.3603454Da
BASm0001415beta-L-rhamnoseC6H12O5Chemical structure of beta-L-rhamnoseNot available
Average164.1565Da
Monoisotopic164.0684735Da
BASm0001463alpha-L-rhamnoseC6H12O5Chemical structure of alpha-L-rhamnose3615-41-6
Average164.1565Da
Monoisotopic164.068473494Da
BASm0001717fumarateC4H2O4Chemical structure of fumarateNot available
Average114.0563Da
Monoisotopic113.9953086Da

Displaying 1–10 of 87 metabolites