Nitrobacter hamburgensis X14

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Nitrobacteraceae

Genus

Nitrobacter

Description

Nitrobacter hamburgensis (strain X14 / DSM 10229) is a rod-shaped, motile, aerobe alpha-proteobacterium. N. hamburgensis is a facultatively lithoautotrophic bacterium that gains energy from the oxidation of nitrite to nitrate (nitrification). It is ubiquitous in nature and has been isolated from several environments, including soil, building sandstone, and sewage sludge. In addition to growing lithoautotrophically, Nitrobacter hamburgensis is able to grow mixotrophically with NO2 and organic components or heterotrophically solely with organic components. It can be used in biotechnology for efficient transformation of fertilizer nitrogen in agricultural systems, and is a key component of nitrogen removal in wastewater treatment. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyNitrobacteraceae
GenusNitrobacter
SpeciesNitrobacter hamburgensis
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Nitrobacter hamburgensis X14
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatTerrestrial
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementNot Available
SporulationNot Available
Energy sourceLithoautotroph - Chemolithoautotroph
PathogenicityNo

Genome Summary

Nitrobacter hamburgensis X14

NC_007964.1NC_007960.1NC_007959.1NC_007961.1

Gene Summary

Adenine Count

58464 bp

Thymine Count

58250 bp

Guanine Count

88932 bp

Cytosine Count

89183 bp

Genome Length

294829 bp

Protein-coding Genes

339 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

4

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
AttlNot AvailableNot Available+356708 - 356719Not Available
Phage integrase/recombinaseNHAM_RS01690Not Available-356920 - 35808943718.9
alpa family transcriptional regulatorNHAM_RS01695Not Available-358090 - 3583298979.61
duf2766 family proteinNHAM_RS01700Not Available-358338 - 35886819490.0
hypothetical proteinNHAM_RS01705Not Available-358937 - 35941917963.0
hypothetical proteinNHAM_RS01710Not Available+359516 - 36012721922.1
Hypothetical proteinNHAM_RS01715Not Available+360182 - 36118636675.2
hypothetical proteinNHAM_RS01720Not Available+361308 - 36211129354.8
Head-tail-adapterNHAM_RS01725Not Available-362135 - 36247011983.5
Portal proteinNHAM_RS01730Not Available-362467 - 36409560305.6

Displaying genes 1 – 10 of 4917 in total

Metabolites

1646 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da
BASm0001225dodecanoateC12H23O2Chemical structure of dodecanoateNot available
Average199.3098Da
Monoisotopic199.169805Da
BASm0001254naphthalene-1,3,6,8-tetrolC10H8O4Chemical structure of naphthalene-1,3,6,8-tetrolNot available
Average192.17Da
Monoisotopic192.042258738Da

Displaying 1–10 of 1646 metabolites