Allorhizobium ampelinum S4

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomicrobiales

Family

Rhizobiaceae

Genus

Gillisella

Description

Allorhizobium ampelinum S4 is a Gram-negative, rod-shaped bacterium that typically exists as single cells and is classified as an aerobic organism. This organism is adapted to diverse habitats, indicating its ecological versatility and potential to thrive in various environmental conditions. The Gram-negative nature of Allorhizobium ampelinum S4 suggests the presence of a thin peptidoglycan layer surrounded by an outer membrane, which may confer certain advantages such as resistance to certain antibiotics and the ability to interact with various substrates in its environment. As a rod-shaped bacterium, its morphology may contribute to its motility and colonization abilities, enhancing its ecological interactions. This organism's aerobic requirement indicates that it utilizes oxygen for its metabolic processes, which may influence its distribution in environments where oxygen is readily available. The ability to survive in multiple habitats highlights its potential role in various ecosystems, possibly contributing to nutrient cycling or plant interactions in soil environments. In summary, Allorhizobium ampelinum S4's adaptability to diverse habitats, coupled with its aerobic metabolism, suggests it may play a significant role in promoting soil health and plant growth through its interactions in the rhizosphere. Further studies could elucidate its specific contributions to ecosystem dynamics and its potential applications in agricultural microbiology.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomicrobiales
FamilyRhizobiaceae
GenusGillisella
SpeciesGillisella ampelina
StrainNo strain

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Allorhizobium ampelinum S4
AI-generated image based on bacteria physiology
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Gene Summary

Adenine Count

789265 bp

Thymine Count

788573 bp

Guanine Count

1072448 bp

Cytosine Count

1076089 bp

Genome Length

3726375 bp

Protein-coding Genes

3284 genes

Non-Coding Genes

204 genes

# of Chromosomes/Plasmids

7

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
plasmid partitioning protein repaAVI_RS22920Not Available+279 - 149644488.0
plasmid partitioning protein repbAVI_RS22925Not Available+1493 - 249136379.4
plasmid replication protein repcAVI_RS22930Not Available+2689 - 390344389.1
alpha/beta fold hydrolaseAVI_RS22935Not Available-3932 - 475329668.5
ggdef domain-containing proteinAVI_RS22940Not Available+4998 - 569024892.9
hypothetical proteinAVI_RS22945Not Available+5858 - 624414053.9
res family nad+ phosphorylaseAVI_RS22950Not Available+6241 - 676819261.8
hypothetical proteinAVI_RS22955Not Available+6832 - 714311338.1
site-specific integraseAVI_RS22960Not Available-7190 - 835642718.4
type ii toxin-antitoxin system vapc family toxinAVI_RS22965Not Available-8346 - 876515066.1

Displaying genes 1 – 10 of 5805 in total

Metabolites

1733 records
Metabolite IDMetabolite nameStructureCAS number
BASm00002502,5-didehydro-D-gluconateC6H7O7Chemical structure of 2,5-didehydro-D-gluconate53736-12-2
Average191.1156Da
Monoisotopic191.019177578Da
BASm00002532-oxopent-4-enoateC5H5O3Chemical structure of 2-oxopent-4-enoateNot available
Average113.093Da
Monoisotopic113.024417601Da
BASm00002603alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5Chemical structure of 3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateNot available
Average405.556Da
Monoisotopic405.264647871Da
BASm0000274aldehydo-D-galacturonateC6H9O7Chemical structure of aldehydo-D-galacturonateNot available
Average193.132Da
Monoisotopic193.0353762Da
BASm00004283-oxoadipateC6H6O5Chemical structure of 3-oxoadipateNot available
Average158.11Da
Monoisotopic158.022620453Da
BASm00005166-deoxyerythronolide BC21H38O6Chemical structure of 6-deoxyerythronolide BNot available
Average386.5228Da
Monoisotopic386.2668389Da
BASm0000553biphenyl-2,3-diolC12H10O2Chemical structure of biphenyl-2,3-diolNot available
Average186.2066Da
Monoisotopic186.0680796Da
BASm0000592(S)-1-phenylethanolC8H10OChemical structure of (S)-1-phenylethanolNot available
Average122.1644Da
Monoisotopic122.0731649Da
BASm0000893crotonobetaineC7H13NO2Chemical structure of crotonobetaine927-89-9
Average143.1836Da
Monoisotopic143.0946287Da
BASm0000989GlycerolC3H8O3Chemical structure of Glycerol56-81-5
Average92.0938Da
Monoisotopic92.04734412Da

Displaying 1–10 of 1733 metabolites