Shigella sonnei Ss046

Gram-negativeRodNon-motileFacultative anaerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Gammaproteobacteria

Order

Enterobacterales

Family

Enterobacteriaceae

Genus

Shigella

Description

Shigella sonnei Ss046 is a gram-negative, rod-shaped bacterium that thrives optimally at moderate temperatures, categorizing it as a mesophile. As a chemoheterotroph, it derives energy from organic compounds and is a facultative anaerobe, allowing it to grow in both aerobic and anaerobic conditions. This microbe primarily inhabits the human gastrointestinal tract, being a causative agent of bacillary dysentery, or shigellosis. The gram-negative cell wall structure of S. sonnei consists of a thin peptidoglycan layer surrounded by an outer membrane rich in lipopolysaccharides. This unique composition contributes to its virulence and resistance to certain antibiotics, making infections challenging to treat. The rod shape enhances its motility within the viscous environment of the intestinal lumen, facilitating colonization and invasion of epithelial cells. As a mesophilic organism, S. sonnei grows best at temperatures ranging from 30°C to 37°C, mirroring the body temperature of its human host. This temperature preference is crucial for its survival and pathogenicity. Being a facultative anaerobe enables S. sonnei to adapt to varying oxygen levels within the intestine, where it ferment carbohydrates to generate energy, even in low-oxygen environments. Shigella sonnei is notable for its ability to cause severe gastrointestinal illness with a low infectious dose—estimated at just 10 to 100 bacteria. This efficiency allows it to spread rapidly, particularly in crowded and unsanitary conditions, such as refugee camps or during outbreaks in institutional settings. The bacterium also has been the subject of research aimed at understanding its pathogenic mechanisms and potential vaccine development, given its significant public health implications.

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassGammaproteobacteria
OrderEnterobacterales
FamilyEnterobacteriaceae
GenusShigella
SpeciesShigella sonnei
StrainSs046

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityNo
Flagellar presenceYes
Number of membranes2
Image of Shigella sonnei Ss046
Ecology, Host, and Life Cycle
Oxygen requirementsFacultative anaerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatHostAssociated
Biotic relationshipFree living
Host(s)Homo sapiens
Cell arrangementPairs - Singles
SporulationNonsporulating
Energy sourceChemoorganotroph
PathogenicityYes

Genome Summary

Shigella sonnei Ss046

Accession NumberNC_009347.1

Gene Summary

Adenine Count

529 bp

Thymine Count

582 bp

Guanine Count

551 bp

Cytosine Count

439 bp

Genome Length

2101 bp

Protein-coding Genes

2 genes

Non-Coding Genes

0 genes

# of Chromosomes/Plasmids

5

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
is3 family transposaseSSON_RS26970Not Available+39961 - 4035914656.1
type 3 secretion system effector ospe2SSON_RS25520Not Available+40541 - 408079967.11
is3 family transposaseSSON_RS30135Not Available-41178 - 4229439249.8
hypothetical proteinSSON_RS25535Not Available+42373 - 4264510816.7
is91 family transposaseSSON_RS25540Not Available+42626 - 4383446058.2
hypothetical proteinSSON_RS32820Not Available+44005 - 441575860.28
is3 family transposaseSSON_RS32825Not Available-44226 - 442882442.01
type 3 secretion system effector ospc1SSON_RS25550Not Available+44739 - 4615153920.2
is3 family transposaseSSON_RS30140Not Available-46255 - 464045611.75
type iii secretion system effector ospd3SSON_RS25555Not Available+46480 - 4817763184.1

Displaying genes 71 – 80 of 5179 in total

Pathways

1 pathway

Metabolites

1 record
Metabolite IDMetabolite nameStructureCAS number
BASm0020436AcetosyringoneC10H12O4Chemical structure of Acetosyringone2478-38-8
Average196.1999Da
Monoisotopic196.073558872Da

Displaying 1–1 of 1 metabolites