Kingdom
Pseudomonadati
Phylum
Bacteroidota
Class
Bacteroidia
Order
Bacteroidales
Family
Bacteroidaceae
Genus
Bacteroides
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Bacteroidota |
| Class | Bacteroidia |
| Order | Bacteroidales |
| Family | Bacteroidaceae |
| Genus | Bacteroides |
| Species | Bacteroides fragilis |
| Strain | YCH46 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | No |
| Flagellar presence | Yes |
| Number of membranes | 2 |

| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Anaerobe |
| Optimal temperature | 37 |
| Temperature range | Mesophilic |
| Habitat | HostAssociated |
| Biotic relationship | Free living |
| Host(s) | Homo sapiens |
| Cell arrangement | Singles |
| Sporulation | Not Available |
| Energy source | Chemoorganotroph |
| Pathogenicity | Yes |
Genome Summary
Bacteroides fragilis YCH46
Accession NumberNC_006297.1
Gene Summary
Adenine Count
12182 bp
Thymine Count
10226 bp
Guanine Count
6525 bp
Cytosine Count
4783 bp
Genome Length
33716 bp
Protein-coding Genes
29670 genes
Non-Coding Genes
4046 genes
# of Chromosomes/Plasmids
2
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| 2,3-bisphosphoglycerate-independent phosphoglycerate mutase | BF_RS01390 | Q64ZN5 | + | 320496 - 322010 | 55635.9 |
| hamp domain-containing sensor histidine kinase | BF_RS01395 | Q38846 | + | 322159 - 323253 | 41325.4 |
| histidine kinase dimerization/phospho-acceptor domain-containing protein | BF_RS01400 | Not Available | + | 323250 - 325193 | 74924.9 |
| duf3109 family protein | BF_RS01405 | Not Available | + | 325548 - 326129 | 21991.4 |
| asma family protein | BF_RS01410 | Not Available | + | 326126 - 329092 | 110089.0 |
| dna topoisomerase (atp-hydrolyzing) subunit b | BF_RS01415 | P94604 | - | 329193 - 331151 | 73156.8 |
| 30s ribosomal protein s20 | BF_RS01420 | Q5LIK4 | - | 331331 - 331585 | 9761.11 |
| Trna-glu | Not Available | Not Available | + | 331622 - 331696 | Not Available |
| dna repair protein reco | BF_RS01430 | Q5LIK3 | + | 331996 - 332724 | 28278.4 |
| gatb/yqey domain-containing protein | BF_RS01435 | P54464 | - | 332834 - 333283 | 16023.5 |
Pathways
7 pathways
Benzoate Catabolism Pathway (benABCD Operon Activation)
Benzoate Catabolism Pathway (benABCD Operon Activation)
Benzoate degradation (catBCIJFD Operon activation)
Benzoate degradation (catBCIJFD Operon activation)
Catabolism of salicylate esters (SalAR Operon activation)
Catabolism of salicylate esters (SalAR Operon activation)
