Kingdom
Pseudomonadati
Phylum
Pseudomonadota
Class
Alphaproteobacteria
Order
Rhodobacterales
Family
Roseobacteraceae
Genus
Ruegeria
Description
Taxonomy
| Kingdom | Pseudomonadati |
|---|---|
| Phylum | Pseudomonadota |
| Class | Alphaproteobacteria |
| Order | Rhodobacterales |
| Family | Roseobacteraceae |
| Genus | Ruegeria |
| Species | Ruegeria sp. TM1040 |
| Strain | TM1040 |
Profile
| Physiology | |
|---|---|
| Gram staining properties | Negative |
| Shape | Rod |
| Mobility | Yes |
| Flagellar presence | Not Available |
| Number of membranes | Not Available |
| Ecology, Host, and Life Cycle | |
|---|---|
| Oxygen requirements | Aerobe |
| Optimal temperature | Not Available |
| Temperature range | Mesophilic |
| Habitat | Multiple |
| Biotic relationship | Free living |
| Host(s) | Pfiesteria piscicida |
| Cell arrangement | Not Available |
| Sporulation | Not Available |
| Energy source | Phototroph |
| Pathogenicity | Not Available |
Gene Summary
Adenine Count
29562 bp
Thymine Count
28464 bp
Guanine Count
35951 bp
Cytosine Count
36996 bp
Genome Length
130973 bp
Protein-coding Genes
106 genes
Non-Coding Genes
7 genes
# of Chromosomes/Plasmids
3
Genes
| Name | Locus Tag | UniProt | Strand | Coordinates | Molecular Weight |
|---|---|---|---|---|---|
| universal stress protein | TM1040_RS17160 | Not Available | + | 2687707 - 2688546 | 30113.3 |
| transcriptional regulator fnrl | TM1040_RS17165 | Not Available | - | 2688724 - 2689464 | 26994.6 |
| oxygen-independent coproporphyrinogen iii oxidase | TM1040_RS17170 | Not Available | + | 2689525 - 2690880 | 50103.8 |
| abc transporter atp-binding protein | TM1040_RS17175 | Not Available | - | 2690971 - 2692563 | 58166.5 |
| abc transporter permease | TM1040_RS17180 | Not Available | - | 2692619 - 2693725 | 41089.2 |
| microcin c abc transporter permease yejb | TM1040_RS17185 | Not Available | - | 2693730 - 2694818 | 39886.2 |
| extracellular solute-binding protein | TM1040_RS17190 | Not Available | - | 2694826 - 2696766 | 72122.2 |
| c-type cytochrome | TM1040_RS17195 | Not Available | - | 2697020 - 2697520 | 17452.5 |
| prephenate dehydratase | TM1040_RS17200 | Not Available | + | 2697641 - 2698471 | 30515.3 |
| phox family protein | TM1040_RS17205 | Not Available | - | 2698525 - 2700408 | 67732.4 |
Pathways
0 pathways
No pathways found
No metabolic pathways have been associated with this bacterium yet.
