Ruegeria sp. TM1040

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Ruegeria

Description

Ruegeria sp. TM1040. This strain was isolated from a culture of the dinoflagellate Pfiesteria piscicida CCMP1830 which has been implicated in many large scale algal blooms resulting in increased mortality in fish. The bacteria are attached to the surface of the dinoflagellate and in some ways allow the dinoflagellate to grow as those lacking the bacteria die off. The bacterium also chemotaxes towards the dinoflagellate product DMSP (dimethylsulfoniopropionate) and metabolizes it. DMSP is a major source of sulfur in marine ecosystems and plays a role in the sulfur biogeochemical cycle. The implication is a tight association between these important dinoflagellates and this marine bacterium. (NCBI BioProject: bp_list[1])

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderRhodobacterales
FamilyRoseobacteraceae
GenusRuegeria
SpeciesRuegeria sp. TM1040
StrainTM1040

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceNot Available
Number of membranesNot Available
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Pfiesteria piscicida
Cell arrangementNot Available
SporulationNot Available
Energy sourcePhototroph
PathogenicityNot Available

Genome Summary

Ruegeria sp. TM1040


Gene Summary

Adenine Count

29562 bp

Thymine Count

28464 bp

Guanine Count

35951 bp

Cytosine Count

36996 bp

Genome Length

130973 bp

Protein-coding Genes

106 genes

Non-Coding Genes

7 genes

# of Chromosomes/Plasmids

3

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
universal stress proteinTM1040_RS17160Not Available+2687707 - 268854630113.3
transcriptional regulator fnrlTM1040_RS17165Not Available-2688724 - 268946426994.6
oxygen-independent coproporphyrinogen iii oxidaseTM1040_RS17170Not Available+2689525 - 269088050103.8
abc transporter atp-binding proteinTM1040_RS17175Not Available-2690971 - 269256358166.5
abc transporter permeaseTM1040_RS17180Not Available-2692619 - 269372541089.2
microcin c abc transporter permease yejbTM1040_RS17185Not Available-2693730 - 269481839886.2
extracellular solute-binding proteinTM1040_RS17190Not Available-2694826 - 269676672122.2
c-type cytochromeTM1040_RS17195Not Available-2697020 - 269752017452.5
prephenate dehydrataseTM1040_RS17200Not Available+2697641 - 269847130515.3
phox family proteinTM1040_RS17205Not Available-2698525 - 270040867732.4

Displaying genes 3461 – 3470 of 3950 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

0 records
Metabolite IDMetabolite nameStructureCAS number
No metabolites foundTry different search terms or mass values.

Displaying 0 metabolites