Ruegeria sp. TM1040

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Rhodobacterales

Family

Roseobacteraceae

Genus

Ruegeria

Description

Ruegeria sp. TM1040. This strain was isolated from a culture of the dinoflagellate Pfiesteria piscicida CCMP1830 which has been implicated in many large scale algal blooms resulting in increased mortality in fish. The bacteria are attached to the surface of the dinoflagellate and in some ways allow the dinoflagellate to grow as those lacking the bacteria die off. The bacterium also chemotaxes towards the dinoflagellate product DMSP (dimethylsulfoniopropionate) and metabolizes it. DMSP is a major source of sulfur in marine ecosystems and plays a role in the sulfur biogeochemical cycle. The implication is a tight association between these important dinoflagellates and this marine bacterium. (NCBI BioProject: bp_list[1])

Taxonomy

Kingdom	Pseudomonadati
Phylum	Pseudomonadota
Class	Alphaproteobacteria
Order	Rhodobacterales
Family	Roseobacteraceae
Genus	Ruegeria
Species	Ruegeria sp. TM1040
Strain	TM1040

Profile

Physiology
Gram staining properties	Negative
Shape	Rod
Mobility	Yes
Flagellar presence	Not Available
Number of membranes	Not Available

Ecology, Host, and Life Cycle
Oxygen requirements	Aerobe
Optimal temperature	Not Available
Temperature range	Mesophilic
Habitat	Multiple
Biotic relationship	Free living
Host(s)	Pfiesteria piscicida
Cell arrangement	Not Available
Sporulation	Not Available
Energy source	Phototroph
Pathogenicity	Not Available

Genome Summary

Ruegeria sp. TM1040

NC_008042.1 NC_008043.1 NC_008044.1

Gene Summary

Adenine Count

167632 bp

Thymine Count

166322 bp

Guanine Count

242456 bp

Cytosine Count

245378 bp

Genome Length

821788 bp

Protein-coding Genes

731 genes

Non-Coding Genes

27 genes

# of Chromosomes/Plasmids

3

Genes

Name	Locus Tag	UniProt	Strand	Coordinates	Molecular Weight
duf4214 domain-containing protein	TM1040_RS00005	Not Available	+	27 - 5300	176239.0
hypothetical protein	TM1040_RS00010	Not Available	+	6566 - 7546	36213.9
hypothetical protein	TM1040_RS19625	Not Available	+	7555 - 7755	7287.72
hypothetical protein	TM1040_RS19630	Not Available	+	7780 - 8247	17038.5
Trna-met	Not Available	Not Available	+	8272 - 8348	Not Available
5s ribosomal rna	Not Available	Not Available	+	8400 - 8514	Not Available
23s ribosomal rna	Not Available	Not Available	+	8758 - 11590	Not Available
Trna-ala	Not Available	Not Available	+	12084 - 12159	Not Available
Trna-ile	Not Available	Not Available	+	12225 - 12301	Not Available
16s ribosomal rna	Not Available	Not Available	+	12441 - 13902	Not Available

Displaying genes 1 – 10 of 3950 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolite ID	Metabolite name	Structure	CAS number	Average mass Monoisotopic mass
BASm0000250	2,5-didehydro-D-gluconateC6H7O7		`53736-12-2`	Average191.1156Da Monoisotopic191.019177578Da
BASm0000253	2-oxopent-4-enoateC5H5O3		Not available	Average113.093Da Monoisotopic113.024417601Da
BASm0000260	3alpha,7alpha-dihydroxy-12-oxo-5beta-cholanateC24H37O5		Not available	Average405.556Da Monoisotopic405.264647871Da
BASm0000274	aldehydo-D-galacturonateC6H9O7		Not available	Average193.132Da Monoisotopic193.0353762Da
BASm0000428	3-oxoadipateC6H6O5		Not available	Average158.11Da Monoisotopic158.022620453Da
BASm0000516	6-deoxyerythronolide BC21H38O6		Not available	Average386.5228Da Monoisotopic386.2668389Da
BASm0000553	biphenyl-2,3-diolC12H10O2		Not available	Average186.2066Da Monoisotopic186.0680796Da
BASm0000592	(S)-1-phenylethanolC8H10O		Not available	Average122.1644Da Monoisotopic122.0731649Da
BASm0000893	crotonobetaineC7H13NO2		`927-89-9`	Average143.1836Da Monoisotopic143.0946287Da
BASm0000989	GlycerolC3H8O3		`56-81-5`	Average92.0938Da Monoisotopic92.04734412Da

Displaying 1–10 of 1677 metabolites