Hyphomonas neptunium ATCC 15444

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomonadales

Family

Hyphomonadaceae

Genus

Hyphomonas

Description

Hyphomonas neptunium, a marine member of the dimorphic prosthecate bacteria (DPB) differs from C. crescentus in that H. neptunium uses its stalk as a reproductive structure. DPB are alpha-proteobacteria that reproduce in an asymmetric manner rather than by binary fission and are of interest as simple models of development. This organism shares more genes with Cauobacter crescentus than it does with Silicibacter pomeroyi (a closer relative according to 16S rRNA phylogeny).; however C.crescentus is also a DPB. Analysis of the H.neptunium genome indicates that it relies upon a heterotrophic strategy utilizing a wide range of substrates, that its cell cycle is likely to be regulated in a similar manner to that of C. crescentus, and that the outer membrane complements of H. neptunium and C. crescentus are remarkably similar. H. neptunium swarmer cells are highly motile via a single polar flagellum. With the exception of cheY and cheR, genes required for chemotaxis were absent in the H. neptunium genome. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomonadales
FamilyHyphomonadaceae
GenusHyphomonas
SpeciesHyphomonas neptunium
StrainATCC 15444

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Hyphomonas neptunium ATCC 15444
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hyphomonas neptunium ATCC 15444

Accession NumberNC_008358.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

3516 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
pyruvate, water dikinase regulatory proteinHNE_RS00005Not Available+258 - 110031515.7
maf family proteinHNE_RS00010Not Available+1097 - 169321516.2
shikimate dehydrogenaseHNE_RS00015Not Available+1690 - 250228487.1
dephospho-coa kinaseHNE_RS00020Not Available+2499 - 310721774.2
dna polymerase iii subunit epsilonHNE_RS00025Not Available+3104 - 380225736.7
protein-export chaperone secbHNE_RS00030Not Available-3810 - 431017729.0
tim44/tima family putative adaptor proteinHNE_RS00035Not Available+4445 - 505922651.8
murein transglycosylase aHNE_RS00040Not Available+5111 - 634943984.2
smr/muts family proteinHNE_RS00045Not Available+6355 - 688519205.2
duf1013 domain-containing proteinHNE_RS00050Not Available-6941 - 761224933.6

Displaying genes 1 – 10 of 3565 in total

Pathways

23 pathways

Metabolites

141 records
Metabolite IDMetabolite nameStructureCAS number
BASm0020166PA(16:1(9Z)/18:1(9Z))C37H69O8PChemical structure of PA(16:1(9Z)/18:1(9Z))NULL
Average672.9127Da
Monoisotopic672.473005696Da
BASm0020169PA(18:0/18:1(9Z))C39H75O8PChemical structure of PA(18:0/18:1(9Z))384833-24-3
Average702.9818Da
Monoisotopic702.519955888Da
BASm0020176PE(14:1(9Z)/16:0)C35H68NO8PChemical structure of PE(14:1(9Z)/16:0)NULL
Average661.8901Da
Monoisotopic661.468254669Da
BASm0020207PS(12:0/16:0)C34H66NO10PChemical structure of PS(12:0/16:0)NULL
Average679.8623Da
Monoisotopic679.442433849Da
BASm0020208PS(12:0/16:1(9Z))C34H64NO10PChemical structure of PS(12:0/16:1(9Z))NULL
Average677.8464Da
Monoisotopic677.426783785Da
BASm0020209PS(14:1(9Z)/16:0)C36H68NO10PChemical structure of PS(14:1(9Z)/16:0)NULL
Average705.8996Da
Monoisotopic705.458083913Da
BASm0030785CDP-DG(12:0/18:1(11Z))C42H75N3O15P2Chemical structure of CDP-DG(12:0/18:1(11Z))NULL
Average924.016Da
Monoisotopic923.467342723Da
BASm0030809CDP-DG(14:0/18:1(11Z))C44H79N3O15P2Chemical structure of CDP-DG(14:0/18:1(11Z))NULL
Average952.07Da
Monoisotopic951.498642852Da
BASm0030858CDP-DG(14:1(9Z)/16:0)C42H75N3O15P2Chemical structure of CDP-DG(14:1(9Z)/16:0)NULL
Average924.016Da
Monoisotopic923.467342723Da
BASm0031891LPA(12:0/0:0)C15H31O7PChemical structure of LPA(12:0/0:0)NULL
Average354.38Da
Monoisotopic354.180740336Da

Displaying 121–130 of 141 metabolites