Hyphomonas neptunium ATCC 15444

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomonadales

Family

Hyphomonadaceae

Genus

Hyphomonas

Description

Hyphomonas neptunium, a marine member of the dimorphic prosthecate bacteria (DPB) differs from C. crescentus in that H. neptunium uses its stalk as a reproductive structure. DPB are alpha-proteobacteria that reproduce in an asymmetric manner rather than by binary fission and are of interest as simple models of development. This organism shares more genes with Cauobacter crescentus than it does with Silicibacter pomeroyi (a closer relative according to 16S rRNA phylogeny).; however C.crescentus is also a DPB. Analysis of the H.neptunium genome indicates that it relies upon a heterotrophic strategy utilizing a wide range of substrates, that its cell cycle is likely to be regulated in a similar manner to that of C. crescentus, and that the outer membrane complements of H. neptunium and C. crescentus are remarkably similar. H. neptunium swarmer cells are highly motile via a single polar flagellum. With the exception of cheY and cheR, genes required for chemotaxis were absent in the H. neptunium genome. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomonadales
FamilyHyphomonadaceae
GenusHyphomonas
SpeciesHyphomonas neptunium
StrainATCC 15444

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Hyphomonas neptunium ATCC 15444
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hyphomonas neptunium ATCC 15444

Accession NumberNC_008358.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

3516 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
ribosome maturation factor rimmHNE_RS00205Not Available+32822 - 3336719982.8
beta/gamma crystallin-related proteinHNE_RS00210Not Available+33458 - 3497855458.4
glycosyltransferase family 2 proteinHNE_RS00215Not Available-34988 - 3573727295.7
monovalent cation:proton antiporter-2 (cpa2) family proteinHNE_RS00220Not Available+35891 - 3769663964.0
trna (guanosine(37)-n1)-methyltransferase trmdHNE_RS00225Not Available+37728 - 3848327243.4
50s ribosomal protein l19HNE_RS19075Not Available+38470 - 3902419913.7
3-isopropylmalate dehydratase large subunitHNE_RS00235Not Available+39148 - 4054549583.1
biotin synthase biobHNE_RS00240Not Available+40571 - 4153334483.3
cysteine synthase aHNE_RS00245Not Available+41629 - 4261233670.1
glutathione s-transferase family proteinHNE_RS00250Not Available+42705 - 4334323258.8

Displaying genes 41 – 50 of 3565 in total

Pathways

23 pathways

Metabolites

141 records
Metabolite IDMetabolite nameStructureCAS number
BASm0017265Uridine diphosphate-N-acetylglucosamineC17H27N3O17P2Chemical structure of Uridine diphosphate-N-acetylglucosamine528-04-1
Average607.3537Da
Monoisotopic607.081569477Da
BASm0017271NADC21H28N7O14P2Chemical structure of NAD53-84-9
Average664.433Da
Monoisotopic664.116946663Da
BASm0017277Adenosine phosphosulfateC10H14N5O10PSChemical structure of Adenosine phosphosulfate485-84-7
Average427.284Da
Monoisotopic427.019898895Da
BASm0017287CarbamoylphosphateCH4NO5PChemical structure of Carbamoylphosphate590-55-6
Average141.0199Da
Monoisotopic140.982708755Da
BASm0017311Adenylsuccinic acidC14H18N5O11PChemical structure of Adenylsuccinic acid19046-78-7
Average463.2934Da
Monoisotopic463.074042955Da
BASm0017328AICARC9H15N4O8PChemical structure of AICAR3031-94-5
Average338.2112Da
Monoisotopic338.062749988Da
BASm0017332D-Ribose-5-phosphateC5H11O8PChemical structure of D-Ribose-5-phosphate4151-19-3
Average230.1098Da
Monoisotopic230.01915384Da
BASm0017364(R)-2,3-Dihydroxy-isovalerateC5H10O4Chemical structure of (R)-2,3-Dihydroxy-isovalerateNULL
Average134.1305Da
Monoisotopic134.057908808Da
BASm0017395CDP-DG(16:0/18:1(9Z))C46H83N3O15P2Chemical structure of CDP-DG(16:0/18:1(9Z))NULL
Average980.124Da
Monoisotopic979.529942981Da
BASm0017399CDP-DG(18:0/18:1(9Z))C48H87N3O15P2Chemical structure of CDP-DG(18:0/18:1(9Z))NULL
Average1008.178Da
Monoisotopic1007.561243109Da

Displaying 51–60 of 141 metabolites