Hyphomonas neptunium ATCC 15444

Gram-negativeRodMotileAerobe

Kingdom

Pseudomonadati

Phylum

Pseudomonadota

Class

Alphaproteobacteria

Order

Hyphomonadales

Family

Hyphomonadaceae

Genus

Hyphomonas

Description

Hyphomonas neptunium, a marine member of the dimorphic prosthecate bacteria (DPB) differs from C. crescentus in that H. neptunium uses its stalk as a reproductive structure. DPB are alpha-proteobacteria that reproduce in an asymmetric manner rather than by binary fission and are of interest as simple models of development. This organism shares more genes with Cauobacter crescentus than it does with Silicibacter pomeroyi (a closer relative according to 16S rRNA phylogeny).; however C.crescentus is also a DPB. Analysis of the H.neptunium genome indicates that it relies upon a heterotrophic strategy utilizing a wide range of substrates, that its cell cycle is likely to be regulated in a similar manner to that of C. crescentus, and that the outer membrane complements of H. neptunium and C. crescentus are remarkably similar. H. neptunium swarmer cells are highly motile via a single polar flagellum. With the exception of cheY and cheR, genes required for chemotaxis were absent in the H. neptunium genome. (EBI Integr8)

Taxonomy

KingdomPseudomonadati
PhylumPseudomonadota
ClassAlphaproteobacteria
OrderHyphomonadales
FamilyHyphomonadaceae
GenusHyphomonas
SpeciesHyphomonas neptunium
StrainATCC 15444

Profile

Physiology
Gram staining propertiesNegative
ShapeRod
MobilityYes
Flagellar presenceYes
Number of membranes2
Image of Hyphomonas neptunium ATCC 15444
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperature37
Temperature rangeMesophilic
HabitatAquatic
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Hyphomonas neptunium ATCC 15444

Accession NumberNC_008358.1

Gene Summary

Adenine Count

Not Available

Thymine Count

Not Available

Guanine Count

Not Available

Cytosine Count

Not Available

Genome Length

Not Available

Protein-coding Genes

3516 genes

Non-Coding Genes

49 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
2,3-diphosphoglycerate-dependent phosphoglycerate mutaseHNE_RS00155Not Available-21486 - 2219926655.7
age family epimerase/isomeraseHNE_RS00160Not Available-22276 - 2341840978.5
hypothetical proteinHNE_RS00165Not Available+23546 - 2412421020.2
prolyl oligopeptidase family serine peptidaseHNE_RS00170Not Available+24240 - 2642079551.5
gnat family n-acetyltransferaseHNE_RS00175Not Available+26519 - 2711522048.6
signal recognition particle proteinHNE_RS00180Not Available+27293 - 2876852115.1
chorismate mutaseHNE_RS00185Not Available+28765 - 2907611713.1
30s ribosomal protein s16HNE_RS19040Not Available+29117 - 2956015722.5
acyltransferase family proteinHNE_RS00195Not Available-29676 - 3165573785.0
beta/gamma crystallin-related proteinHNE_RS17660Not Available+31948 - 3281131244.7

Displaying genes 31 – 40 of 3565 in total

Pathways

23 pathways
1,6-Anhydro-N-acetylmuramic Acid Recycling pathway thumbnail
1,6-Anhydro-N-acetylmuramic Acid Recycling
1,6-Anhydro-N-acetylmuramic Acid Recycling
Show All 23 Pathways

Metabolites

141 records
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Result columns

Structure search compares stored SMILES, InChI, and InChIKey text. Exact mass must match the stored database value.

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Metabolite IDMetabolite nameStructureCAS number
Average massMonoisotopic mass
BASm0017737PG(14:1(7Z)/14:1(7Z))C34H63O10PChemical structure of PG(14:1(7Z)/14:1(7Z))NULL
Average662.842Da
Monoisotopic662.415885227Da
BASm0017743Stearoyl-CoAC39H70N7O17P3SChemical structure of Stearoyl-CoA362-66-3
Average1033.996Da
Monoisotopic1033.376174075Da
BASm0017775PE(12:0/14:0)C31H62NO8PChemical structure of PE(12:0/14:0)NULL
Average607.81Da
Monoisotopic607.421304958Da
BASm0017777PE(12:0/16:0)C33H66NO8PChemical structure of PE(12:0/16:0)NULL
Average635.864Da
Monoisotopic635.452605087Da
BASm0017778PE(12:0/16:1(9Z))C33H64NO8PChemical structure of PE(12:0/16:1(9Z))NULL
Average633.848Da
Monoisotopic633.436955023Da
BASm0017781PE(12:0/18:1(11Z))C35H68NO8PChemical structure of PE(12:0/18:1(11Z))NULL
Average661.902Da
Monoisotopic661.468255152Da
BASm0018523CDP-DG(12:0/14:0)C38H69N3O15P2Chemical structure of CDP-DG(12:0/14:0)NULL
Average869.924Da
Monoisotopic869.42039253Da
BASm0018525CDP-DG(12:0/16:0)C40H73N3O15P2Chemical structure of CDP-DG(12:0/16:0)NULL
Average897.978Da
Monoisotopic897.451692659Da
BASm0018526CDP-DG(12:0/16:1(9Z))C40H71N3O15P2Chemical structure of CDP-DG(12:0/16:1(9Z))NULL
Average895.962Da
Monoisotopic895.436042594Da
BASm0018533CDP-DG(14:0/16:0)C42H77N3O15P2Chemical structure of CDP-DG(14:0/16:0)NULL
Average926.032Da
Monoisotopic925.482992787Da

Displaying 71–80 of 141 metabolites