Kocuria rhizophila

Gram-positiveCocciNon-motileAerobe

Kingdom

Bacillati

Phylum

Actinomycetota

Class

Actinomycetes

Order

Micrococcales

Family

Micrococcaceae

Genus

Kocuria

Description

Kocuria rhizophila is a Gram-positive, cocci-shaped bacterium classified as a facultative anaerobe that thrives at mesophilic temperatures, primarily inhabiting various environments such as soil, water, and plant surfaces. This microbe demonstrates versatility in its metabolic processes as a chemoheterotroph, sourcing energy from organic compounds, which allows it to adapt to diverse ecological niches. As a Gram-positive organism, Kocuria rhizophila retains a thick peptidoglycan layer that contributes to its structural integrity and resilience against environmental stresses. The cocci shape is typical of many bacteria and can influence its reproduction and colonization strategies. Being facultative anaerobes, these bacteria can grow in both the presence and absence of oxygen, utilizing aerobic respiration when oxygen is available and switching to fermentation pathways when it is not. This adaptability allows Kocuria rhizophila to colonize various body sites, including skin, respiratory tracts, and as a part of the normal flora in the human and animal microbiomes. Kocuria rhizophila has garnered attention for its role in bioremediation processes, where it demonstrates the ability to degrade pollutants, thereby contributing to environmental detoxification. Furthermore, it has been studied for its potential applications in biotechnology, particularly in the production of bioactive compounds, including antimicrobial agents. This microbe exemplifies the intricate relationship between microorganisms and their environments, showcasing its capacity to thrive in diverse habitats and its potential benefits to human health and environmental sustainability.

Taxonomy

KingdomBacillati
PhylumActinomycetota
ClassActinomycetes
OrderMicrococcales
FamilyMicrococcaceae
GenusKocuria
SpeciesKocuria rhizophila
StrainNo strain

Profile

Physiology
Gram staining propertiesPositive
ShapeCocci
MobilityNo
Flagellar presenceYes
Number of membranes1
Image of Kocuria rhizophila
Ecology, Host, and Life Cycle
Oxygen requirementsAerobe
Optimal temperatureNot Available
Temperature rangeMesophilic
HabitatMultiple
Biotic relationshipFree living
Host(s)Not Available
Cell arrangementSingles - Tetrads
SporulationNot Available
Energy sourceNot Available
PathogenicityNot Available

Genome Summary

Kocuria rhizophila

Accession NumberQFNW00000000.1

Gene Summary

Adenine Count

823803 bp

Thymine Count

820101 bp

Guanine Count

1517517 bp

Cytosine Count

1527469 bp

Genome Length

4688931 bp

Protein-coding Genes

4435 genes

Non-Coding Genes

70 genes

# of Chromosomes/Plasmids

1

Genes

NameLocus TagUniProtStrandCoordinatesMolecular Weight
winged helix family transcriptional regulatorDI613_01700Not Available+383198 - 38399829568.8
histidine phosphataseDI613_01705Not Available+384106 - 38462718793.5
molecular chaperone hsp90DI613_01710Not Available-384646 - 38513718140.2
deoxyribonucleaseDI613_01715Not Available-385230 - 38640841202.8
Trna-argNot AvailableNot Available+386435 - 386510Not Available
phosphoenolpyruvate carboxykinase (gtp)DI613_01725Not Available+386778 - 38864368243.1
sugar abc transporter atp-binding proteinDI613_01730Not Available+388767 - 39036857518.4
hypothetical proteinDI613_01735Not Available-390710 - 39107813057.7
rrf2 family transcriptional regulatorDI613_01740Not Available+391440 - 39190116010.5
hemin transporterDI613_01745Not Available+391969 - 39315943708.9

Displaying genes 331 – 340 of 4505 in total

Pathways

0 pathways

No pathways found

No metabolic pathways have been associated with this bacterium yet.

Metabolites

20 records
Metabolite IDMetabolite nameStructureCAS number
BASm0001779orotateC5H3N2O4Chemical structure of orotateNot available
Average155.09Da
Monoisotopic155.0098302Da
BASm0001865diphosphateHO7P2Chemical structure of diphosphateNot available
Average174.95Da
Monoisotopic174.9213971Da
BASm0002631(5Z,8Z,11Z,14Z)-eicosatetraenoyl-CoAC41H62N7O17P3SChemical structure of (5Z,8Z,11Z,14Z)-eicosatetraenoyl-CoA17046-56-9
Average1049.96Da
Monoisotopic1049.31577Da
BASm0002644(9Z,12Z)-octadecadienoyl-CoAC39H62N7O17P3SChemical structure of (9Z,12Z)-octadecadienoyl-CoA6709-57-5
Average1025.94Da
Monoisotopic1025.31577Da
BASm0002655octadecanoyl-CoAC39H66N7O17P3SChemical structure of octadecanoyl-CoANot available
Average1029.97Da
Monoisotopic1029.347070181Da
BASm0002780orotidine 5'-phosphateC10H10N2O11PNot available2149-82-8
Average365.168Da
Monoisotopic365.003866888Da
BASm0002963meso-2,6-diaminoheptanedioateC7H14N2O4Chemical structure of meso-2,6-diaminoheptanedioate922-54-3
Average190.1971Da
Monoisotopic190.0953569Da
BASm0003389NADP(+)C21H25N7O17P3Chemical structure of NADP(+)Not available
Average740.386Da
Monoisotopic740.053624107Da
BASm0004133(9Z)-hexadecenoyl-CoAC37H60N7O17P3SChemical structure of (9Z)-hexadecenoyl-CoANot available
Average999.9Da
Monoisotopic999.300119988Da
BASm0004172(R)-4'-phosphopantetheineC11H21N2O7PSChemical structure of (R)-4'-phosphopantetheineNot available
Average356.33Da
Monoisotopic356.081806356Da

Displaying 1–10 of 20 metabolites